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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 19038476
plastid: 21433289
extracellular: 23159799
nucleus: 23777608
extracellular: 25047395
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19038476 doi
XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim
Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0519900-01 Rice nucleus, plasma membrane, plastid 98.81 98.81
Os12t0169000-00 Rice plasma membrane 11.03 15.68
Os11t0170000-01 Rice peroxisome 11.27 15.57
Os04t0102700-01 Rice plasma membrane 11.15 15.46
Solyc12g070080.1.1 Tomato cytosol, plastid 2.73 15.44
Os04t0118100-01 Rice cytosol 7.83 15.17
Os04t0117900-01 Rice plasma membrane, plastid 7.35 14.29
Os04t0643200-00 Rice plastid 8.9 14.04
Os02t0754500-01 Rice cytosol, mitochondrion, plastid 10.2 14.03
Os03t0707900-01 Rice plasma membrane 9.73 13.99
CDX69906 Canola cytosol, plastid 9.73 13.6
Os11t0536800-01 Rice golgi, plastid 8.9 11.21
Solyc12g070090.1.1 Tomato cytosol 2.85 11.11
Os04t0102600-01 Rice mitochondrion 0.36 1.46
Os11t0170200-01 Rice nucleus 0.12 0.11
CDX69905 Canola mitochondrion 0.0 0.0
Bra022265.1-P Field mustard cytosol, mitochondrion 0.0 0.0
Protein Annotations
MapMan:17.5.2.1Gene3D:2.40.30.10Gene3D:3.30.230.10Gene3D:3.30.70.240Gene3D:3.30.70.870Gene3D:3.40.50.300
Gene3D:3.90.1430.10EntrezGene:4334959EMBL:AK101166EMBL:AK101405ProteinID:BAF13971.1ProteinID:BAS87630.1
ProteinID:BAS87632.1ProteinID:BAS87633.1ProteinID:CAE01286.2ProteinID:EAZ29503.1EMBL:EF122483InterPro:EFG_III/V
InterPro:EFG_V-likeInterPro:EFTu-like_2GO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003746GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0006412
GO:GO:0006414GO:GO:0008135GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016787GO:GO:0019538InterPro:G_TR_CSInterPro:IPR000795InterPro:IPR014721EnsemblPlantsGene:Os04g0118400
EnsemblPlants:Os04t0118400-01InterPro:P-loop_NTPasePFAM:PF00009PFAM:PF00679PFAM:PF03144PFAM:PF03764
PFAM:PF14492PRINTS:PR00315ScanProsite:PS00301PFscan:PS51722PANTHER:PTHR42908PANTHER:PTHR42908:SF11
UniProt:Q7XTK1InterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgrSMART:SM00838SMART:SM00889SUPFAM:SSF50447
SUPFAM:SSF52540SUPFAM:SSF54211SUPFAM:SSF54980InterPro:Small_GTP-bd_domInterPro:TF_GTP-bd_domTIGRFAMs:TIGR00231
InterPro:Transl_B-barrel_sfInterPro:Transl_elong_EFG/EF2_IVUniParc:UPI00001AE515RefSeq:XP_015635594.1RefSeq:XP_015635596.1:
Description
Similar to Elongation factor EF-2 (Fragment). (Os04t0118400-01);Similar to H0613H07.5 protein. (Os04t0118400-02);Similar to H0613H07.5 protein. (Os04t0118400-03)
Coordinates
chr4:+:1093436..1098638
Molecular Weight (calculated)
93978.8 Da
IEP (calculated)
6.031
GRAVY (calculated)
-0.201
Length
843 amino acids
Sequence
(BLAST)
001: MVKFTVEELR RIMDKKNNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLFYE MSDESLKLYK GERDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVE GEEAYQTFSR VIENANVIMA TYEDTLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLSSFAKMYA SKFGVDESKM MERLWGENFF DPATKKWTNK STGSATCKRG FVQFCYEPIK QIINTCMNDQ KDKLWPMLQK
301: LGVVMKADEK DLMGKALMKR VMQTWLPASN ALLEMMIYHL PSPSKAQKYR VENLYEGPLD DVYATAIRNC DPEGPLMLYV SKMIPASDKG RFFAFGRVFS
401: GRVATGMKVR IMGPNYVPGQ KKDLYVKSVQ RTVIWMGKKQ ESVEDVPCGN TVAMVGLDQF ITKNATLTNE KEADACPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVLC TIEESGEHII AGAGELHLEI CLKDLQEDFM GGAEIIVSPP VVSFRETVLE KSCRTVMSKS PNKHNRLYME ARPLEEGLAE
601: AIDDGRIGPR DDPKVRSKIL SEEFGWDKDL AKKIWCFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGALAEE NMRGICFEVC DVVLHADAIH
701: RGGGQVIPTA RRVIYASQLT AKPRLLEPVY LVEIQAPENA LGGIYGVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVIESFG FSSQLRAATS GQAFPQCVFD
801: HWDMMTSDPL EVSSQANQLV LDIRKRKGLK EQMTPLSDFE DKL
Best Arabidopsis Sequence Match ( AT1G56070.1 )
(BLAST)
001: MVKFTADELR RIMDYKHNIR NMSVIAHVDH GKSTLTDSLV AAAGIIAQEV AGDVRMTDTR ADEAERGITI KSTGISLYYE MTDESLKSFT GARDGNEYLI
101: NLIDSPGHVD FSSEVTAALR ITDGALVVVD CIEGVCVQTE TVLRQALGER IRPVLTVNKM DRCFLELQVD GEEAYQTFSR VIENANVIMA TYEDPLLGDV
201: QVYPEKGTVA FSAGLHGWAF TLTNFAKMYA SKFGVVESKM MERLWGENFF DPATRKWSGK NTGSPTCKRG FVQFCYEPIK QIIATCMNDQ KDKLWPMLAK
301: LGVSMKNDEK ELMGKPLMKR VMQTWLPAST ALLEMMIFHL PSPHTAQRYR VENLYEGPLD DQYANAIRNC DPNGPLMLYV SKMIPASDKG RFFAFGRVFA
401: GKVSTGMKVR IMGPNYIPGE KKDLYTKSVQ RTVIWMGKRQ ETVEDVPCGN TVAMVGLDQF ITKNATLTNE KEVDAHPIRA MKFSVSPVVR VAVQCKVASD
501: LPKLVEGLKR LAKSDPMVVC TMEESGEHIV AGAGELHLEI CLKDLQDDFM GGAEIIKSDP VVSFRETVCD RSTRTVMSKS PNKHNRLYME ARPMEEGLAE
601: AIDDGRIGPR DDPKIRSKIL AEEFGWDKDL AKKIWAFGPE TTGPNMVVDM CKGVQYLNEI KDSVVAGFQW ASKEGPLAEE NMRGICFEVC DVVLHSDAIH
701: RGGGQVIPTA RRVIYASQIT AKPRLLEPVY MVEIQAPEGA LGGIYSVLNQ KRGHVFEEMQ RPGTPLYNIK AYLPVVESFG FSSQLRAATS GQAFPQCVFD
801: HWEMMSSDPL EPGTQASVLV ADIRKRKGLK EAMTPLSEFE DKL
Arabidopsis Description
LOS1Elongation factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASR1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.