Factsheet for Os04t0643200-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 23257241
plastid: 23257241

gfp PMID: 23257241 doi

L Xu, C Carrie, SR Law, MW Murcha, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11532	Sorghum	plastid	84.27	83.18
TraesCS2B01G549500.1	Wheat	mitochondrion, plastid	83.15	82.07
TraesCS2D01G521500.1	Wheat	plastid	82.96	81.89
TraesCS2A01G520300.1	Wheat	mitochondrion, plastid	82.96	81.89
Zm00001d002104_P001	Maize	mitochondrion, plastid	82.58	80.77
HORVU2Hr1G115000.1	Barley	cytosol, plastid	80.71	77.38
Bra017354.1-P	Field mustard	cytosol, peroxisome, plastid	50.56	65.22
Solyc10g007840.2.1	Tomato	plastid	62.36	62.95
KRG98874	Soybean	mitochondrion	55.81	62.74
Bra026512.1-P	Field mustard	cytosol	21.16	62.43
CDY46509	Canola	cytosol	21.16	62.43
KRH46093	Soybean	mitochondrion	63.3	62.25
VIT_12s0028g01330.t01	Wine grape	mitochondrion	63.3	61.9
GSMUA_Achr9P09040_001	Banana	plastid	67.04	61.83
AT3G25660.1	Thale cress	plastid	61.05	60.71
CDY04173	Canola	plastid	60.86	60.41
CDY59872	Canola	plastid	60.67	60.22
PGSC0003DMT400054702	Potato	mitochondrion	48.5	50.59
PGSC0003DMT400054703	Potato	cytoskeleton, cytosol, nucleus, plastid	24.72	38.04
Os12t0169000-00	Rice	plasma membrane	24.72	22.26
Os04t0118100-01	Rice	cytosol	17.79	21.84
Os11t0170000-01	Rice	peroxisome	23.6	20.66
Os04t0117900-01	Rice	plasma membrane, plastid	16.48	20.28
Os04t0102700-01	Rice	plasma membrane	21.35	18.75
Os11t0536800-01	Rice	golgi, plastid	20.6	16.44
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	16.29	14.19
Os03t0707900-01	Rice	plasma membrane	15.54	14.16
Os02t0519900-01	Rice	nucleus, plasma membrane, plastid	14.23	9.02
Os04t0118400-01	Rice	extracellular	14.04	8.9
Os11t0170200-01	Rice	nucleus	0.56	0.33
Os04t0102600-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00970+6.3.5.7	MapMan:17.2.8.1	Gene3D:3.90.1300.10	UniProt:A0A0N7KJT1	InterPro:AS_sf	InterPro:Amidase
InterPro:Amidase_CS	InterPro:Amidase_dom	ProteinID:BAS91281.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004040	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016787
GO:GO:0016874	GO:GO:0016884	GO:GO:0019538	GO:GO:0030956	GO:GO:0032543	GO:GO:0050567
GO:GO:0070681	InterPro:GatA	InterPro:IPR036928	HAMAP:MF_00120	EnsemblPlantsGene:Os04g0643200	EnsemblPlants:Os04t0643200-00
PFAM:PF01425	ScanProsite:PS00571	PANTHER:PTHR11895	PANTHER:PTHR11895:SF141	SUPFAM:SSF75304	TIGRFAMs:TIGR00132
UniParc:UPI0003939668	SEG:seg	:	:	:	:

Description

Amidase family protein. (Os04t0643200-00)

Coordinates

chr4:-:32736613..32739871

Molecular Weight (calculated)

56378.2 Da

IEP (calculated)

7.996

GRAVY (calculated)

-0.069

Length

534 amino acids

Sequence
(BLAST)

001: MHTSFPSPRL ICCAPKPRTP TLTRGGVRRR ASPPAAAMPP PLQAQRLLLS HRRLPSPHLR CFTAVSSLPS APAKTVAAAA AHAPSSILSI RESLLSGERT
101: AAEITAEYLS RLRRTEPSVR SFIHVADAAA EREAEELDRR IATEGLDAVG PLAGVLVGVK DNLCTANMPS TGGSRILDGY QPAYDATAVR RLREAGAIVV
201: GKTNLDEFGM GSTTEGSGFQ VTTNPWDDSR VPGGSSGGSA SAVSARQCVV SLGSDTGGSV RQPASFCGVV GLKPTYGRVS RFGLMAYASS LDVVGCFGSS
301: VVDTATILSV IAGHDKMDST SSSHDVSDYK SELVPLDLLE SKPLNGMRIG IIQETLGEGV ETGVISSIKD AASHLEQLGS VVEEVSLPSF SLGLPAYYIL
401: ASSEASSNLS RYDGIRYGRQ VSGDDLNELY GGSRANGLGH EVKMRILMGT YALSAGYYDA YYKRAQQVRT LVKKSFKEAL ERYDILVSPA APSAAYKIGE
501: KINDPLAMYA GDTMTVNVNL AGLPALVVPC GFLR

Best Arabidopsis Sequence Match ( AT3G25660.1 )
(BLAST)

001: MLSTLQPPRS LSLLPLRRFQ ISKTIVSAAS SKTIDTSVIS PPQSQILTTR RSLLSGETTA VEIAKSYLSR IRLTEPQLKC FLHVSENVLK DAQEIDQRIA
101: KGEELGPLAG VLIGVKDNIC TQGMPSTAAS RILEHYRPPF DATAVKKIKE LGGIVVGKTN MDEFGMGSTT EASAFQVTAN PWDLSRVPGG SSGGSAAAVA
201: ARQCMVSLGS DTGGSVRQPA SFCGVVGLKP TYGRVSRFGL MAYASSLDVI GCFGSTVADA GMLLHAISGY DRFDSTSSKQ DVPEFQSQFL SVDHFESKPL
301: NGVKVGIIRE TLEDGVDSGV RSATQEAASH LEALGCILTE VSLPSFSLGL PAYYVIASSE SSSNLSRYDG VRYGNQVMAE ELNKLYECSR GEGFGGEVKM
401: RILMGTYALS AGYYDAYYKR AQQVRTLIRK DFKAALEQND ILISPAAPSA AYKIGEKKDD PLAMYAGDIM TVNVNLAGLP AMVLPCGLVE GGPSGLPVGL
501: QMIGAAFDEE KLLKVGHIFE QTLKGSSFVP PLLANVA

Arabidopsis Description

GATAGlutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.