Factsheet for Os04t0117900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0118100-01	Rice	cytosol	87.1	86.9
EER97555	Sorghum	cytosol	73.73	73.23
Zm00001d006886_P002	Maize	cytosol	73.96	72.3
TraesCS2D01G573300.1	Wheat	cytosol	73.96	71.49
TraesCS2B01G624200.1	Wheat	cytosol	72.35	69.78
TraesCS2A01G562400.1	Wheat	cytosol	73.27	69.74
TraesCS2B01G603900.1	Wheat	cytosol	66.59	65.38
TraesCS5D01G083700.1	Wheat	cytosol	44.93	64.78
TraesCS2D01G573400.3	Wheat	cytosol, endoplasmic reticulum, peroxisome	62.9	63.05
GSMUA_Achr3P09030_001	Banana	cytosol, plasma membrane	55.76	57.89
KRG92836	Soybean	cytosol	56.22	56.35
VIT_14s0128g00320.t01	Wine grape	cytosol	55.99	56.12
Bra031652.1-P	Field mustard	cytosol	54.38	56.06
CDY06342	Canola	cytosol	54.38	55.92
KRH33958	Soybean	cytosol	55.53	55.66
CDY22653	Canola	cytosol	53.46	54.98
AT1G08980.1	Thale cress	cytosol	53.46	54.59
HORVU2Hr1G126540.1	Barley	cytosol	40.78	52.06
Solyc10g086170.1.1	Tomato	cytosol	50.92	51.88
CDY03602	Canola	cytosol, plastid	33.41	47.39
Os03t0707900-01	Rice	plasma membrane	43.32	32.08
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	40.78	28.87
Os12t0169000-00	Rice	plasma membrane	22.58	16.53
Os04t0643200-00	Rice	plastid	20.28	16.48
Os11t0170000-01	Rice	peroxisome	20.28	14.43
Os04t0102700-01	Rice	plasma membrane	19.59	13.98
Os11t0536800-01	Rice	golgi, plastid	17.51	11.36
Os02t0519900-01	Rice	nucleus, plasma membrane, plastid	14.29	7.35
Os04t0118400-01	Rice	extracellular	14.29	7.35
PGSC0003DMT400031298	Potato	cytosol	0.46	1.25
Os11t0170200-01	Rice	nucleus	0.0	0.0
Os04t0102600-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00970+6.3.5.7	MapMan:11.2.1.2.1	Gene3D:3.90.1300.10	EntrezGene:4334956	UniProt:A3AQC6	EMBL:AK243470
InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_CS	InterPro:Amidase_dom	ProteinID:BAF13968.2	ProteinID:BAS87626.1
ProteinID:EAZ29515.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040	GO:GO:0016787	InterPro:IPR036928
EnsemblPlantsGene:Os04g0117900	EnsemblPlants:Os04t0117900-01	PFAM:PF01425	ScanProsite:PS00571	PANTHER:PTHR11895	PANTHER:PTHR11895:SF111
SUPFAM:SSF75304	UniParc:UPI0000E57EEF	RefSeq:XP_015635919.1	SEG:seg	:	:

Description

Amidase family protein. (Os04t0117900-01)

Coordinates

chr4:+:1054609..1070887

Molecular Weight (calculated)

45664.5 Da

IEP (calculated)

5.485

GRAVY (calculated)

0.169

Length

434 amino acids

Sequence
(BLAST)

001: MAEDFGAFME RFVLPPPPPP SSQQLPLHGL TFAIKDIFDI AGRVTGFGNP DWARTHAPAA ATSPVVLAAL AAGATSLGTT IMDEMAYSIY GENAHYGTPA
101: NPCAPGRVPG GSSSGSAVAV AANLVDFSLG TDTGGSVRVP AAYCGIFGLR TSHGLVSAQN VIPMAQMFDT VGWFARDLST LSRVTKVLLP LPDDTVKHPT
201: HVTIPMDCFQ ILGSPDDHTY QIVNASVAKK FGSHAIDNAN LGDFVSDNVP SIGKFIADFS ESELPSVPAL SVISHVMFSL LRSQFKANHA EWVNSVKPNL
301: GPGLRENIHG AVASGDDEPL EEFLAVRAEF KSALAALLKD HGILAIPTVP GPPPMVGIQA QAAPLDNYQA RAFSLLDIAV VSGFCQVSIP LGKRNGLPVS
401: VSLVARHGAD HFLLNVAEEL YQTLIDEAAK AWAS

Best Arabidopsis Sequence Match ( AT1G08980.1 )
(BLAST)

001: MATNNDFGAF IEKVTISPTS TSSSPPSLQG LTFAIKDIFD VEGRVTGFGN PDWLRTHSAA TSTAPVVSSL LEAGATALGI TIMDEMAYSI NGENAHYGTP
101: RNPIAFDRVP GGSSSGSAVA VAARLVDFSI GTDTGGSVRV PASYCGIFGF RPSHGAVSTV GLTPMAQSFD TVGWFARDTA TLKRVGCVLL QQHHLNPIEP
201: SQLIIADDCF KLCSVPHDLL VQPLVGSVEK SFGGNTVVKK VNLGEYIGQN VPSLKHFMTS DDVTTQQEFC IPSLMALSSS MRLLQRHEFK INHGAWISSV
301: KPEFGPGISE RIEEAIRTSD EKIDHCRSVK SELITALSTL LGEKGVLVIP TVPGPPPHLQ ANVAALESFR SRAFSLLSIA GVSGFCQVSI PLGLHENLPV
401: SVSLVAKYGS DGFLLSLVDS LAAFI

Arabidopsis Description

AMI1Amidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FR37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.