Factsheet for Os04t0102600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
peroxisome 1
plasma membrane 1
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0707900-01	Rice	plasma membrane	5.83	2.05
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	5.34	1.79
Os04t0102700-01	Rice	plasma membrane	3.4	1.15
Os11t0170000-01	Rice	peroxisome	2.43	0.82
Os11t0536800-01	Rice	golgi, plastid	1.94	0.6
Os02t0519900-01	Rice	nucleus, plasma membrane, plastid	1.46	0.36
Os04t0118400-01	Rice	extracellular	1.46	0.36
Os04t0118100-01	Rice	cytosol	0.49	0.23
Os11t0170200-01	Rice	nucleus	0.49	0.11
Os04t0117900-01	Rice	plasma membrane, plastid	0.0	0.0
Os04t0643200-00	Rice	plastid	0.0	0.0
Os12t0169000-00	Rice	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:2.10.109.10	MapMan:35.2	EntrezGene:4334892	EMBL:AK070814	EMBL:AK104417	ProteinID:BAS87512.1
ProteinID:CAE01583.2	ProteinID:EAZ29424.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006465	GO:GO:0006627	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	GO:GO:0033108	GO:GO:0042720
InterPro:LexA/Signal_pep-like_sf	EnsemblPlantsGene:Os04g0102600	EnsemblPlants:Os04t0102600-01	PANTHER:PTHR12383	PANTHER:PTHR12383:SF5	UniProt:Q7XTB4
SUPFAM:SSF51306	UniParc:UPI00001B0C2B	RefSeq:XP_015636365.1	:	:	:

Description

Similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit). (Os04t0102600-01)

Coordinates

chr4:-:182523..186397

Molecular Weight (calculated)

23288.9 Da

IEP (calculated)

5.358

GRAVY (calculated)

-0.311

Length

206 amino acids

Sequence
(BLAST)

001: MVSLSTWFRY AAHKFEYSIS LSWKKYNVGQ INSTQLTDAV WKNFFQGKLT YMHWNKGGEA MAPIESTTGG TLLVRKLVNL SPTQVFVGDV VLLKDPEKSD
101: DLIVRRLAAL EGYEMVSNDE KDEPFVLDKD QCWVLADNQS LKPKEARDSR LFGPVPMTDI LGRVIYSLRT AVDHGPVENS RMAMNQDSPV LAVELDVEEM
201: AKNNKV

Best Arabidopsis Sequence Match ( AT2G31140.1 )
(BLAST)

001: MASISTWFRY MAHKLEYSLT LSLKSHRSNK LSDRELIQII CKNLFYGKIT YLHSDKGPEM SPTMTANENT LLIRKIPIAN TRFVFIGDAV VLKDPNDSDK
101: YLVRRLAAVE GFEMVSGDEK EEPFVLEKNQ CWVTAENQEL KAKEAYDSRT FGPVSTADIV GRAIYCLRTA VDHGPVRNSQ TAMGQDSPIL AVELDVDEMA
201: KNHKA

Arabidopsis Description

At2g31140 [Source:UniProtKB/TrEMBL;Acc:Q84VZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.