Factsheet for GSMUA_Achr8P01650_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P15670_001
GSMUA_Achr8P00730_001
GSMUA_Achr9P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	GSMUA_Achr8P00730_001	AT1G27390.1	17981999
AT3G20000.1	GSMUA_Achr1P15670_001	AT2G19080.1	17981999
AT3G20000.1	GSMUA_Achr8P00730_001	AT3G27080.1	17981999
AT3G20000.1	GSMUA_Achr9P14860_001	AT5G09420.1	17981999
AT3G20000.1	GSMUA_Achr8P00730_001	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	87.0	84.13
GSMUA_Achr10P...	Banana	extracellular, vacuole	47.68	81.91
Os03t0323800-01	Rice	cytosol, mitochondrion	83.59	80.12
Zm00001d028971_P001	Maize	cytosol	81.42	78.74
EER94935	Sorghum	cytosol, plastid	81.11	78.68
Zm00001d047566_P008	Maize	cytosol	80.5	78.08
GSMUA_Achr10P...	Banana	plastid	51.39	77.57
HORVU4Hr1G051720.1	Barley	cytosol	80.5	77.38
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	80.5	77.38
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	83.9	77.21
TraesCS4B01G175300.1	Wheat	cytosol	80.19	77.08
TraesCS4A01G129200.1	Wheat	plastid	80.19	77.08
VIT_03s0097g00590.t01	Wine grape	cytosol	73.37	76.7
KRH60449	Soybean	mitochondrion	70.9	74.35
KRH41747	Soybean	mitochondrion	71.21	74.19
Solyc06g007710.2.1	Tomato	plastid	71.83	73.89
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	70.28	72.76
CDY33440	Canola	cytosol	65.02	67.74
CDY42223	Canola	cytosol	64.71	67.42
Bra038249.1-P	Field mustard	cytosol	64.09	66.77
CDX82267	Canola	cytosol	63.47	66.34
CDY36066	Canola	cytosol	63.16	66.02
AT3G20000.1	Thale cress	cytosol	63.16	66.02
KXG32258	Sorghum	plastid	68.11	65.28
Zm00001d008242_P001	Maize	mitochondrion	67.8	64.79
CDY24571	Canola	cytosol	58.51	61.16
Bra035826.1-P	Field mustard	cytosol	58.2	60.84
AT1G50400.1	Thale cress	cytosol	58.2	60.65
TraesCS3A01G188600.1	Wheat	cytosol	62.85	60.6
CDY25368	Canola	cytosol	57.89	60.52
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	62.54	60.48
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	61.92	59.88
HORVU3Hr1G039040.6	Barley	mitochondrion	64.09	56.87
Zm00001d040440_P001	Maize	plastid	31.89	56.28
CDY37141	Canola	cytosol	49.85	50.31
Bra018846.1-P	Field mustard	cytosol	48.92	49.38
CDY22793	Canola	cytosol	48.61	49.06
Os01t0276200-00	Rice	mitochondrion	60.37	47.1

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008320	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085
EnsemblPlantsGene:GSMUA_Achr8G01650_001	EnsemblPlants:GSMUA_Achr8P01650_001	EnsemblPlants:GSMUA_Achr8T01650_001	InterPro:IPR023614	UniProt:M0TLR7	PFAM:PF01459
PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	InterPro:Tom40	UniParc:UPI000295D908
SEG:seg	:	:	:	:	:

Description

Mitochondrial import receptor subunit TOM40 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G01650_001]

Coordinates

chr8:-:1288398..1295713

Molecular Weight (calculated)

35870.8 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.228

Length

323 amino acids

Sequence
(BLAST)

001: MGSSVSHAAA PPPPPTAVGL AVALPPKQDE KAEPKNVDWL NLPCPVPFEE IQREALMSLK PELFEGLKFD FTKGLNQRFS LSHSIFMGSM EVPSQSSDTF
101: KVPTAHYEFG ANFLDPKLML VGRVLTDGRL NARVKCDLTD NLTLKINAQL TNEPHFSQGM FNFDYKGTDY RTQFQIGNNA FYGANYIQSI SPHLSLGTEI
201: FWLGHQRKSG IGFAARYNTD KIVVTGQVAS TGIVALSYVQ KVSEKVSLAS DFMYNHLTQD ATSSFGYDYI LRQCRLRGKL DSNGVVAAFL EERLNMGVNF
301: ILSAEVDHRK KDYKFGFGLT VGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.