Factsheet for TraesCS4D01G177200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, unclear, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, unclear
Any Predictor:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308
mitochondrion: 26136264

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G429800.1
TraesCS3B01G467700.1
TraesCS3D01G425100.1
TraesCS6A01G318800.1
TraesCS6B01G349000.1
TraesCS6D01G298000.1
TraesCS7A01G130600.1
TraesCS7B01G030900.1
TraesCS7D01G130000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	TraesCS3A01G429800.1	AT1G27390.1	17981999
AT3G20000.1	TraesCS3B01G467700.1	AT1G27390.1	17981999
AT3G20000.1	TraesCS3D01G425100.1	AT1G27390.1	17981999
AT3G20000.1	TraesCS7A01G130600.1	AT2G19080.1	17981999
AT3G20000.1	TraesCS7B01G030900.1	AT2G19080.1	17981999
AT3G20000.1	TraesCS7D01G130000.1	AT2G19080.1	17981999
AT3G20000.1	TraesCS3A01G429800.1	AT3G27080.1	17981999
AT3G20000.1	TraesCS3B01G467700.1	AT3G27080.1	17981999
AT3G20000.1	TraesCS3D01G425100.1	AT3G27080.1	17981999
AT3G20000.1	TraesCS6A01G318800.1	AT5G09420.1	17981999
AT3G20000.1	TraesCS6B01G349000.1	AT5G09420.1	17981999
AT3G20000.1	TraesCS6D01G298000.1	AT5G09420.1	17981999
AT3G20000.1	TraesCS3A01G429800.1	AT5G40930.1	17981999
AT3G20000.1	TraesCS3B01G467700.1	AT5G40930.1	17981999
AT3G20000.1	TraesCS3D01G425100.1	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G175300.1	Wheat	cytosol	99.4	99.4
HORVU4Hr1G051720.1	Barley	cytosol	98.81	98.81
TraesCS4A01G129200.1	Wheat	plastid	98.21	98.21
Os03t0323800-01	Rice	cytosol, mitochondrion	88.39	88.13
EER94935	Sorghum	cytosol, plastid	85.71	86.49
Zm00001d028971_P001	Maize	cytosol	85.42	85.93
Zm00001d047566_P008	Maize	cytosol	85.12	85.89
GSMUA_Achr8P01650_001	Banana	plastid	77.38	80.5
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	78.27	78.74
VIT_03s0097g00590.t01	Wine grape	cytosol	69.64	75.73
GSMUA_Achr10P...	Banana	extracellular, vacuole	41.07	73.4
Solyc06g007710.2.1	Tomato	plastid	67.86	72.61
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	67.26	72.44
KRH60449	Soybean	mitochondrion	65.18	71.1
KRH41747	Soybean	mitochondrion	65.48	70.97
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	71.43	68.38
CDY33440	Canola	cytosol	62.8	68.06
CDY42223	Canola	cytosol	62.5	67.74
AT3G20000.1	Thale cress	cytosol	61.9	67.31
Bra038249.1-P	Field mustard	cytosol	61.9	67.1
GSMUA_Achr10P...	Banana	plastid	42.26	66.36
CDX82267	Canola	cytosol	61.01	66.34
CDY36066	Canola	cytosol	61.01	66.34
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	65.77	66.17
AT1G50400.1	Thale cress	cytosol	57.74	62.58
CDY24571	Canola	cytosol	57.14	62.14
Bra035826.1-P	Field mustard	cytosol	56.85	61.81
PGSC0003DMT400051986	Potato	cytosol, plastid	13.39	61.64
CDY25368	Canola	cytosol	56.55	61.49
CDY37141	Canola	cytosol	49.7	52.19
Bra018846.1-P	Field mustard	cytosol	48.81	51.25
CDY22793	Canola	cytosol	48.51	50.94

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006810	GO:GO:0008150
GO:GO:0008320	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085
InterPro:IPR023614	PFAM:PF01459	PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf
InterPro:Tom40	EnsemblPlantsGene:TraesCS4D01G177200	EnsemblPlants:TraesCS4D01G177200.1	TIGR:cd07305	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:308593270..308597371

Molecular Weight (calculated)

37051.3 Da

IEP (calculated)

6.680

GRAVY (calculated)

-0.282

Length

336 amino acids

Sequence
(BLAST)

001: MGSAASAASD AAPPPPSPAQ PHGAAPPYGV GLAGILPQKP DGDDKKEEKV DYLNLPCPVP YEEIQREALM SLKPELFEGL RFDFTKMLTQ KFALSHSVLM
101: GSLEVPSQSA DVIKVPTSQY EFGANFLDPK LMLIGRLMTD GRLNARVKCD LTENLALKIN AQLTSEPHYS QGMFNFDYKG TDYRAQFQIG NNAFYGANYI
201: QSVTPNLSMG TEIFWLGQQR KSGIGFNSRY NTDKMVGTLQ VASTGIVALS YVQKVSEKVS LATDFMYNHM SRDVTSSVGY DYILRQCRLR GKVDSNGVVA
301: AYLEERLNMG VNFLLSAEID HPKKNYKFGF GMTVGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.