Factsheet for Bra035826.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009383.1-P
Bra010946.1-P
Bra030044.1-P
Bra032826.1-P
Bra032980.1-P
Bra038562.1-P
Bra038838.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	Bra010946.1-P	AT1G27390.1	17981999
AT3G20000.1	Bra030044.1-P	AT1G27390.1	17981999
AT3G20000.1	Bra032826.1-P	AT1G27390.1	17981999
AT3G20000.1	Bra038562.1-P	AT2G19080.1	17981999
AT3G20000.1	Bra038838.1-P	AT2G19080.1	17981999
AT3G20000.1	Bra032980.1-P	AT3G27080.1	17981999
AT3G20000.1	Bra009383.1-P	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25368	Canola	cytosol	99.68	99.68
AT3G20000.1	Thale cress	cytosol	78.64	78.64
Bra038249.1-P	Field mustard	cytosol	77.35	77.1
VIT_03s0097g00590.t01	Wine grape	cytosol	66.99	66.99
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	66.34	65.71
KRH60449	Soybean	mitochondrion	64.08	64.29
KRH41747	Soybean	mitochondrion	64.08	63.87
Solyc06g007710.2.1	Tomato	plastid	64.4	63.38
PGSC0003DMT400051986	Potato	cytosol, plastid	13.92	58.9
EER94935	Sorghum	cytosol, plastid	62.78	58.26
GSMUA_Achr8P01650_001	Banana	plastid	60.84	58.2
Zm00001d028971_P001	Maize	cytosol	62.78	58.08
Zm00001d047566_P008	Maize	cytosol	62.14	57.66
Os03t0323800-01	Rice	cytosol, mitochondrion	62.78	57.57
HORVU4Hr1G051720.1	Barley	cytosol	62.14	57.14
TraesCS4A01G129200.1	Wheat	plastid	62.14	57.14
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	61.81	56.85
TraesCS4B01G175300.1	Wheat	cytosol	61.81	56.85
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	61.16	56.59
Bra018846.1-P	Field mustard	cytosol	55.02	53.12
GSMUA_Achr10P...	Banana	extracellular, vacuole	31.72	52.13
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	58.25	51.28
GSMUA_Achr10P...	Banana	plastid	34.95	50.47
KXG32258	Sorghum	plastid	54.69	50.15
TraesCS3A01G188600.1	Wheat	cytosol	53.4	49.25
Zm00001d008242_P001	Maize	mitochondrion	53.72	49.11
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	53.07	49.1
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	53.07	49.1
HORVU3Hr1G039040.6	Barley	mitochondrion	55.66	47.25
Zm00001d040440_P001	Maize	plastid	27.51	46.45
Os01t0276200-00	Rice	mitochondrion	49.84	37.2

Protein Annotations

Gene3D:2.40.160.10	MapMan:23.2.1.6	EnsemblPlantsGene:Bra035826	EnsemblPlants:Bra035826.1	EnsemblPlants:Bra035826.1-P	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030150	GO:GO:0055085	InterPro:IPR023614	UniProt:M4F426	PFAM:PF01459
PANTHER:PTHR10802	PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	InterPro:Tom40	UniParc:UPI0002547CB6

Description

AT3G20000 (E=8e-151) TOM40 | TOM40; P-P-bond-hydrolysis-driven protein transmembrane transporter/ voltage-gated anion channel

Coordinates

chrA05:-:17422731..17425193

Molecular Weight (calculated)

34325.2 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.236

Length

309 amino acids

Sequence
(BLAST)

001: MADLFPPLVT AQIDDKPKVD EKVDYSNLPC PVPYDELHRE AYISLKTENF EGFRFDFTKG LNQKFALCHS VMMGPMEVPS QSPDTTIKIP TAHYEFGANY
101: ADPKLMLVGR VMTDGRTSAR VRADLTDKLM MKANAQITNE PHMSSAMFHF DYMGSDYRAQ LQFGNSALIG ANYIQSVTPR LSLGGEVFWA GGPRKSGIGY
201: AARYETDKMV ASGQVASTGL LLMNYVQKVS DKVSLATDFM YNVFSREAVA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLIS AELDHKKKDY
301: KFGFGLTVG

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.