Factsheet for Bra032826.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035826.1-P
Bra038249.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	Bra035826.1-P	AT3G20000.1	17981999
AT1G27390.1	Bra038249.1-P	AT3G20000.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27615	Canola	cytosol	100.0	100.0
CDX84923	Canola	cytosol	95.75	97.6
Bra030044.1-P	Field mustard	cytosol	79.25	78.14
AT1G27390.1	Thale cress	cytosol	72.64	73.33
Bra010946.1-P	Field mustard	cytosol	68.87	69.86
Solyc02g068130.2.1	Tomato	plastid	56.13	58.33
PGSC0003DMT400052223	Potato	cytosol	55.66	57.56
KRH31475	Soybean	mitochondrion	53.77	56.72
Solyc02g094140.2.1	Tomato	cytosol	53.77	55.88
KRG97423	Soybean	cytosol	54.25	53.0
Bra032980.1-P	Field mustard	cytosol	47.64	50.75
PGSC0003DMT400056939	Potato	cytosol	38.21	47.93
PGSC0003DMT400056935	Potato	cytosol	43.4	47.92
EES01977	Sorghum	cytosol	45.75	47.78
Zm00001d012017_P002	Maize	mitochondrion	45.28	47.52
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	45.28	47.29
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	16.04	44.74
Os01t0921600-01	Rice	mitochondrion, plastid	41.51	43.56
TraesCS3A01G429800.1	Wheat	cytosol	42.92	43.33
TraesCS3D01G425100.1	Wheat	cytosol	42.45	43.06
TraesCS3B01G467700.1	Wheat	golgi	41.98	42.58
Zm00001d040209_P001	Maize	cytosol	27.83	36.2
HORVU3Hr1G094550.2	Barley	plastid	25.0	23.66
HORVU7Hr1G075380.6	Barley	cytosol, plastid	15.57	20.12

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	EnsemblPlantsGene:Bra032826	EnsemblPlants:Bra032826.1	EnsemblPlants:Bra032826.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0045040	InterPro:IPR011990	UniProt:M4EVJ3	PFAM:PD102047
PFAM:PF06552	PANTHER:PTHR32409	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002542595	SEG:seg	:	:	:	:

Description

AT1G27390 (E=5e-077) TOM20-2 | TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2); P-P-bond-hydrolysis-driven protein transmembrane transporter/ metal ion binding

Coordinates

chrA09:+:12576307..12577423

Molecular Weight (calculated)

22837.1 Da

IEP (calculated)

5.939

GRAVY (calculated)

-0.383

Length

212 amino acids

Sequence
(BLAST)

001: MEFSAADFER LLMFEHARKA CEAQYAKDPL DSENLLQWGG ALLELAQFQS IPEAKLMLND AVSKLEEVLT LNPGKHQALW CLGNAYTAHA FLTPDTDEAK
101: VHFDKAADYF QRAENEDPGN EMYLKSLEVT ARAPGLHMNI HGNGTMQQSL GGGGGGGGGP SASSNAGGGK KKNKKKNNDF TYDVCGWIIL AFGIVAWVGM
201: AKSLGPPPPP AR

Best Arabidopsis Sequence Match ( AT1G27390.1 )
(BLAST)

001: MEFSTADFER LIMFEHARKN SEAQYKNDPL DSENLLKWGG ALLELSQFQP IPEAKLMLND AISKLEEALT INPGKHQALW CIANAYTAHA FYVHDPEEAK
101: EHFDKATEYF QRAENEDPGN DTYRKSLDSS LKAPELHMQF MNQGMGQQIL GGGGGGGGGG MASSNVSQSS KKKKRNTEFT YDVCGWIILA CGIVAWVGMA
201: KSLGPPPPAR

Arabidopsis Description

TOM20-2TOM20-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.