Factsheet for Solyc02g094140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g087680.2.1
Solyc01g087710.2.1
Solyc03g083000.2.1
Solyc03g120880.2.1
Solyc06g007710.2.1
Solyc06g074170.2.1
Solyc06g082800.2.1
Solyc07g054210.2.1
Solyc07g055050.2.1
Solyc10g006900.2.1
Solyc11g066510.1.1
Solyc11g068750.1.1
Solyc12g007130.1.1
Solyc12g010870.1.1
Solyc12g013710.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27390.1	Solyc06g007710.2.1	AT3G20000.1	17981999
AT1G27390.1	Solyc06g082800.2.1	AT3G20000.1	17981999
AT3G27080.1	Solyc07g054210.2.1	AT1G03630.1	21798944
AT3G27080.1	Solyc10g006900.2.1	AT1G03630.1	21798944
AT3G27080.1	Solyc12g013710.1.1	AT1G03630.1	21798944
AT3G27080.1	Solyc12g007130.1.1	AT2G20130.1	21798944
AT3G27080.1	Solyc07g055050.2.1	AT2G31040.1	21798944
AT3G27080.1	Solyc12g010870.1.1	AT2G31040.1	21798944
AT3G27080.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT3G27080.1	Solyc06g007710.2.1	AT3G20000.1	17981999
AT3G27080.1	Solyc06g082800.2.1	AT3G20000.1	17981999
AT3G27080.1	Solyc01g087680.2.1	AT5G13720.1	21798944
AT3G27080.1	Solyc01g087710.2.1	AT5G13720.1	21798944
AT3G27080.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT3G27080.1	Solyc11g068750.1.1	AT5G22290.1	21798944
AT5G40930.1	Solyc11g066510.1.1	AT2G27940.1	21798944
AT5G40930.1	Solyc03g083000.2.1	AT2G46550.1	21798944
AT5G40930.1	Solyc06g007710.2.1	AT3G20000.1	17981999
AT5G40930.1	Solyc06g082800.2.1	AT3G20000.1	17981999
AT5G40930.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT5G40930.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052223	Potato	cytosol	91.67	91.22
VIT_14s0068g02030.t01	Wine grape	cytosol	72.06	73.13
Solyc02g068130.2.1	Tomato	plastid	72.55	72.55
KRH57705	Soybean	nucleus	69.61	67.62
KRG94268	Soybean	nucleus	68.14	66.51
KRH31475	Soybean	mitochondrion	56.86	57.71
Bra032980.1-P	Field mustard	cytosol	55.88	57.29
CDY34181	Canola	cytosol	55.88	57.29
AT5G40930.1	Thale cress	cytosol	51.47	56.15
AT3G27080.1	Thale cress	cytosol	54.9	55.45
CDY28496	Canola	cytosol	54.9	55.45
CDX84923	Canola	cytosol	55.39	54.33
Os01t0921600-01	Rice	mitochondrion, plastid	53.43	53.96
KRG97423	Soybean	cytosol	57.35	53.92
Bra032826.1-P	Field mustard	cytosol	55.88	53.77
CDY27615	Canola	cytosol	55.88	53.77
Zm00001d042329_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	51.47	51.72
EES01977	Sorghum	cytosol	51.47	51.72
CDY03918	Canola	cytosol	51.47	50.48
Zm00001d012017_P002	Maize	mitochondrion	49.51	50.0
CDY15710	Canola	cytosol	51.47	49.53
AT1G27390.1	Thale cress	cytosol	50.49	49.05
Bra030044.1-P	Field mustard	cytosol	51.47	48.84
GSMUA_Achr8P00730_001	Banana	plasma membrane, vacuole	18.14	48.68
TraesCS3B01G467700.1	Wheat	golgi	49.51	48.33
TraesCS3A01G429800.1	Wheat	cytosol	49.51	48.1
TraesCS3D01G425100.1	Wheat	cytosol	48.53	47.37
CDX90082	Canola	cytosol	44.61	43.75
Bra010946.1-P	Field mustard	cytosol	44.61	43.54
CDY11814	Canola	cytosol	44.12	43.27
Zm00001d040209_P001	Maize	cytosol	30.39	38.04
CDY35747	Canola	cytosol	22.06	35.16
AT3G27070.2	Thale cress	plasma membrane	39.71	32.66
HORVU3Hr1G094550.2	Barley	plastid	29.41	26.79
HORVU7Hr1G075380.6	Barley	cytosol, plastid	18.14	22.56

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.2.1.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005742	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0045040
InterPro:IPR011990	UniProt:K4BDK9	PFAM:PD102047	PFAM:PF06552	PANTHER:PTHR32409	SUPFAM:SSF48452
EnsemblPlantsGene:Solyc02g094140.2	EnsemblPlants:Solyc02g094140.2.1	TMHMM:TMhelix	InterPro:TOM20_imprt_rcpt	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002768A9A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:54768415..54775514

Molecular Weight (calculated)

22638.6 Da

IEP (calculated)

5.081

GRAVY (calculated)

-0.472

Length

204 amino acids

Sequence
(BLAST)

001: MDMQSDFDRL LFFEHARKTA ETTYATDPLD AENLTRWAGA LLELSQFQSV SESKKMISDA ISKLEEALEV NPQKHDAIWC LGNAYTSHGF LNPDEDEAKI
101: FFDKAAQCFQ QAVDADPENE LYQKSFEVSS KTSELHAQIH KQGPLQQAMG PGPSTTTSST KGAKKKSSDL KYDVFGWVIL AVGLVAWIGF AKSNMPPPAH
201: PLPR

Best Arabidopsis Sequence Match ( AT3G27080.1 )
(BLAST)

001: MDTETEFDRI LLFEQIRQDA ENTYKSNPLD ADNLTRWGGV LLELSQFHSI SDAKQMIQEA ITKFEEALLI DPKKDEAVWC IGNAYTSFAF LTPDETEAKH
101: NFDLATQFFQ QAVDEQPDNT HYLKSLEMTA KAPQLHAEAY KQGLGSQPMG RVEAPAPPSS KAVKNKKSSD AKYDAMGWVI LAIGVVAWIS FAKANVPVSP
201: PR

Arabidopsis Description

TOM20-3Mitochondrial import receptor subunit TOM20-3 [Source:UniProtKB/Swiss-Prot;Acc:P82874]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.