Factsheet for Solyc11g066510.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g068130.2.1
Solyc02g094140.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27940.1	Solyc02g068130.2.1	AT5G40930.1	21798944
AT2G27940.1	Solyc02g094140.2.1	AT5G40930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001221	Potato	vacuole	72.88	91.98
Bra011991.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	24.15	40.14
CDY04519	Canola	endoplasmic reticulum, extracellular, plasma membrane	23.73	39.44
AT2G27940.1	Thale cress	plasma membrane	29.24	29.11
KRH53320	Soybean	mitochondrion	11.44	25.47
GSMUA_Achr4P12270_001	Banana	plastid	17.8	24.28
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	16.95	23.81
TraesCS1A01G192600.1	Wheat	plastid	17.8	19.91
Os10t0574400-01	Rice	mitochondrion, plasma membrane, plastid	16.53	19.6
Zm00001d030038_P001	Maize	plastid	19.07	19.4
Solyc08g005110.1.1	Tomato	plastid	22.46	19.34
OQU92087	Sorghum	golgi, peroxisome, plastid	19.49	18.47
KRH14610	Soybean	endoplasmic reticulum, nucleus, plastid	13.56	18.18
Solyc03g112340.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	29.24	17.34
Solyc05g018310.1.1	Tomato	extracellular, plasma membrane, vacuole	22.88	16.67
Solyc04g074820.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	27.54	16.54
KRH31340	Soybean	endoplasmic reticulum, plasma membrane	15.25	16.0
Solyc08g076800.2.1	Tomato	plastid	19.07	15.9
Solyc12g087860.1.1	Tomato	vacuole	24.58	15.55
Solyc12g007320.1.1	Tomato	plasma membrane	20.76	12.86
Solyc07g007440.1.1	Tomato	plasma membrane, vacuole	19.92	11.19

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161
GO:GO:0046872	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR011016	InterPro:IPR013083	UniProt:K4D9Q8
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF274	SMART:SM00184	SMART:SM00744
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc11g066510.1	EnsemblPlants:Solyc11g066510.1.1	TMHMM:TMhelix	UniParc:UPI0002769FA6	InterPro:Znf_RING
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:52267644..52269375

Molecular Weight (calculated)

26559.8 Da

IEP (calculated)

7.632

GRAVY (calculated)

-0.068

Length

236 amino acids

Sequence
(BLAST)

001: MKRILLQYSN PEILHYSMSS SDPTITYQPM NDSVATAIGR PFKLTAPFDS SMALTILVLL TALFFMGFFS IYIRHFAGDI TTSAGSDEDR RRRNLSLSSS
101: STFAHRSCRK GMDPSTVQSL PLISYGGAAK HLIEDCPICL SEFEVSELVR LIPYCRHVFH QQCLDTWLSS HVTCPLCRST QFFKDEVCLD IVDVRDENVV
201: SERSTVQQCD TCRCIRRSCS SSNLGSRVTL HRSASF

Best Arabidopsis Sequence Match ( AT2G27940.1 )
(BLAST)

001: METKHLRKLL QLYQACGGEQ ELTKTVQNVT SSPLTPTPPP QPPSALDSTM ALTIFILLVA LFFMGFFSVY FRHFADSSSS TVDISSMPRT RSSRMSPRRL
101: STSVVVSRPY SFRRGLDSQA VRSLPVYRYT KAAKQRNEDC VICLSDFEEG ETVKVIPHCG HVFHVDCVDT WLSSYVTCPL CRSNQLFSDK DLGMQEPPDQ
201: DSAEEHDTCD GVDTCVRRCS SCSSLGQRTG LERSLSL

Arabidopsis Description

ATL57RING-H2 finger protein ATL57 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.