Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g074170.2.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72200.1 | Solyc06g074170.2.1 | AT5G22290.1 | 21798944 |
| AT1G72200.1 | Solyc11g068750.1.1 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045807 | Potato | plasma membrane | 89.81 | 88.62 |
| Solyc04g074820.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 38.61 | 36.64 |
| KRH52998 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 32.71 | 36.53 |
| KRH62285 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 30.83 | 33.82 |
| KRH16796 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 32.44 | 31.93 |
| KRH72413 | Soybean | cytosol, golgi, vacuole | 31.37 | 31.28 |
| Bra003887.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 29.49 | 30.64 |
| AT1G22500.1 | Thale cress | plasma membrane | 30.83 | 30.18 |
| Bra040855.1-P | Field mustard | golgi, plasma membrane | 30.03 | 29.79 |
| CDY21367 | Canola | golgi, plasma membrane | 30.03 | 29.79 |
| CDY62007 | Canola | golgi, plasma membrane | 30.03 | 29.79 |
| CDX82179 | Canola | plasma membrane | 27.88 | 29.63 |
| CDY70284 | Canola | plasma membrane | 30.83 | 29.56 |
| Bra008016.1-P | Field mustard | plasma membrane | 31.64 | 29.28 |
| CDY03651 | Canola | plasma membrane | 31.64 | 29.28 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 26.54 | 28.7 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 26.27 | 28.49 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 23.06 | 28.2 |
| VIT_18s0001g06670.t01 | Wine grape | extracellular, plasma membrane, vacuole | 30.03 | 28.14 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 21.98 | 28.08 |
| CDX82176 | Canola | extracellular | 27.35 | 27.95 |
| Bra012330.1-P | Field mustard | golgi, plasma membrane | 25.74 | 27.91 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 15.82 | 27.83 |
| AT1G72200.1 | Thale cress | plasma membrane | 29.49 | 27.23 |
| CDX82175 | Canola | extracellular | 16.89 | 26.92 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 25.47 | 26.91 |
| Solyc08g076800.2.1 | Tomato | plastid | 20.11 | 26.5 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 27.35 | 26.42 |
| Solyc08g005110.1.1 | Tomato | plastid | 19.3 | 26.28 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 27.61 | 26.28 |
| Bra008015.1-P | Field mustard | plasma membrane | 27.88 | 26.26 |
| CDY03652 | Canola | plasma membrane | 27.88 | 26.26 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 25.2 | 26.26 |
| Solyc03g112340.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 27.88 | 26.13 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 26.81 | 26.04 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 27.08 | 26.03 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 27.61 | 26.01 |
| Zm00001d005936_P001 | Maize | plasma membrane | 27.35 | 25.95 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 16.35 | 25.74 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 27.35 | 25.69 |
| GSMUA_AchrUn_... | Banana | plastid | 24.66 | 25.56 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 21.18 | 25.08 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 26.01 | 25.06 |
| Solyc11g066510.1.1 | Tomato | nucleus | 15.55 | 24.58 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 26.54 | 24.5 |
| TraesCS6D01G113000.1 | Wheat | golgi | 26.27 | 24.44 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 26.27 | 24.14 |
| Zm00001d020789_P001 | Maize | plasma membrane | 25.74 | 24.12 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 26.54 | 24.03 |
| KRH72412 | Soybean | nucleus, plasma membrane, plastid | 24.66 | 23.83 |
| Os08t0484200-01 | Rice | golgi | 26.27 | 23.73 |
| EES18560 | Sorghum | golgi, plasma membrane | 24.93 | 23.66 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 22.52 | 23.53 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 25.47 | 23.51 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.2 | 23.38 |
| KRH16794 | Soybean | plasma membrane | 24.4 | 23.21 |
| GSMUA_Achr10P... | Banana | plasma membrane | 24.13 | 23.2 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 25.2 | 23.15 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 21.98 | 23.1 |
| Zm00001d031261_P001 | Maize | golgi | 23.32 | 23.08 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 26.01 | 23.04 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 24.93 | 22.96 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 25.47 | 22.89 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 24.66 | 22.72 |
| Zm00001d018122_P001 | Maize | vacuole | 25.47 | 22.67 |
| TraesCS7D01G178000.1 | Wheat | golgi | 24.66 | 22.55 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 21.45 | 22.54 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 14.21 | 22.27 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 21.18 | 22.25 |
| TraesCS7B01G081700.1 | Wheat | golgi | 24.66 | 22.22 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 25.2 | 22.22 |
| Os03t0188200-01 | Rice | golgi | 20.64 | 21.81 |
| TraesCS7A01G176700.1 | Wheat | golgi | 24.13 | 21.69 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 13.67 | 21.43 |
| EER92732 | Sorghum | golgi | 20.91 | 21.2 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 24.93 | 21.04 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 24.4 | 20.82 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 19.57 | 20.17 |
| Zm00001d048230_P001 | Maize | golgi | 20.38 | 20.0 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 20.11 | 19.38 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 19.57 | 18.86 |
| TraesCS4D01G200100.1 | Wheat | plastid | 20.64 | 18.6 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 19.03 | 18.54 |
| HORVU4Hr1G057610.1 | Barley | plastid | 20.11 | 18.2 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 15.55 | 17.9 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 26.01 | 17.8 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 19.57 | 17.55 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 20.38 | 17.47 |
| TraesCS4B01G199100.1 | Wheat | plastid | 20.11 | 16.78 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 15.55 | 15.22 |
| Solyc07g007440.1.1 | Tomato | plasma membrane, vacuole | 16.62 | 14.76 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR013083 | UniProt:K4DGK7 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF263 |
| SMART:SM00184 | SUPFAM:SSF57850 | SignalP:SignalP-TM | EnsemblPlantsGene:Solyc12g087860.1 | EnsemblPlants:Solyc12g087860.1.1 | TMHMM:TMhelix |
| UniParc:UPI000276A83D | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr12:+:63360181..63361302
Molecular Weight (calculated)
42009.3 Da
IEP (calculated)
9.199
GRAVY (calculated)
-0.370
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRKTNTFYF VLCFFCIVAE AGTILDTPSI SPTTLTHSID PSNVQISPTL AVILACLVLI LFAGVFIYMR RMSPDSFDHS LGFHFLRNRS PISRGLDPEI
101: IKTFPVFIYS DVKSLNLGKS ILECAVCLNE FEEEETLRLL PNCHHVFHPE CIDAWLAFRT TCPVCRTNLK TKPINQTNPQ HVNSVTDTVI DIHTTSHCGP
201: QGPREVNNAS PNNISNFSNA KRKTTDFISI ARKSSTPRRT NISRMFNRSH STGHSLIQPG QNCERFTLKL PEDARKRLME LSLSRAYNNG EVLSLERSSS
301: KGYRFEPGNG RFKFLSTPNL LSNKPGSSKE EKSEKEPKNL LKSVKSPLSL LCLTEKEETG ERSFTYLRSN PSS
101: IKTFPVFIYS DVKSLNLGKS ILECAVCLNE FEEEETLRLL PNCHHVFHPE CIDAWLAFRT TCPVCRTNLK TKPINQTNPQ HVNSVTDTVI DIHTTSHCGP
201: QGPREVNNAS PNNISNFSNA KRKTTDFISI ARKSSTPRRT NISRMFNRSH STGHSLIQPG QNCERFTLKL PEDARKRLME LSLSRAYNNG EVLSLERSSS
301: KGYRFEPGNG RFKFLSTPNL LSNKPGSSKE EKSEKEPKNL LKSVKSPLSL LCLTEKEETG ERSFTYLRSN PSS
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.