Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72200.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT1G72200.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT1G72200.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT1G72200.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT1G72200.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03652 | Canola | plasma membrane | 81.1 | 74.75 |
| CDY70284 | Canola | plasma membrane | 75.34 | 70.69 |
| CDX82179 | Canola | plasma membrane | 67.95 | 70.66 |
| CDX82175 | Canola | extracellular | 44.93 | 70.09 |
| CDY03651 | Canola | plasma membrane | 76.99 | 69.73 |
| AT1G72200.1 | Thale cress | plasma membrane | 69.32 | 62.62 |
| CDY50446 | Canola | mitochondrion | 38.63 | 59.0 |
| CDY62007 | Canola | golgi, plasma membrane | 55.07 | 53.46 |
| CDY21367 | Canola | golgi, plasma membrane | 54.52 | 52.93 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 30.96 | 47.48 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 30.68 | 47.06 |
| KRH62285 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 32.88 | 35.29 |
| KRH72413 | Soybean | cytosol, golgi, vacuole | 35.62 | 34.76 |
| KRH52998 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 31.78 | 34.73 |
| KRH16796 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 34.79 | 33.51 |
| CDY39477 | Canola | extracellular | 27.4 | 32.26 |
| CDX90377 | Canola | extracellular, golgi | 27.12 | 32.14 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 30.68 | 32.0 |
| VIT_18s0001g06670.t01 | Wine grape | extracellular, plasma membrane, vacuole | 34.79 | 31.91 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 31.78 | 31.52 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 31.78 | 31.52 |
| CDX99986 | Canola | plasma membrane | 30.14 | 31.52 |
| CDX80653 | Canola | plasma membrane | 26.03 | 31.35 |
| CDY05049 | Canola | plasma membrane | 24.93 | 31.16 |
| CDY53236 | Canola | plasma membrane | 29.32 | 30.84 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 24.66 | 30.82 |
| CDX86163 | Canola | plasma membrane | 25.21 | 30.67 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 25.48 | 30.59 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 28.22 | 29.86 |
| Solyc04g074820.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 32.05 | 29.77 |
| CDX75097 | Canola | extracellular | 11.23 | 29.71 |
| CDY48058 | Canola | extracellular | 11.23 | 29.71 |
| PGSC0003DMT400005472 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 31.78 | 29.67 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 24.66 | 29.51 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 26.58 | 28.61 |
| CDY31686 | Canola | nucleus | 8.22 | 28.57 |
| CDY18787 | Canola | plasma membrane | 30.14 | 28.42 |
| KRH72412 | Soybean | nucleus, plasma membrane, plastid | 29.86 | 28.24 |
| CDY25038 | Canola | plasma membrane | 28.49 | 28.11 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 26.3 | 27.91 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 16.16 | 27.83 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 29.59 | 27.55 |
| CDY05577 | Canola | plasma membrane | 28.77 | 27.49 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 26.58 | 27.48 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 29.04 | 27.39 |
| Solyc12g087860.1.1 | Tomato | vacuole | 27.95 | 27.35 |
| Zm00001d005936_P001 | Maize | plasma membrane | 29.32 | 27.23 |
| CDY05713 | Canola | extracellular | 10.96 | 27.21 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 28.49 | 27.08 |
| KRH16794 | Soybean | plasma membrane | 29.04 | 27.04 |
| PGSC0003DMT400045807 | Potato | plasma membrane | 27.95 | 26.98 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 29.04 | 26.77 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 10.41 | 26.76 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 29.04 | 26.7 |
| GSMUA_Achr10P... | Banana | plasma membrane | 28.22 | 26.55 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 28.22 | 26.55 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 22.19 | 25.88 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 25.21 | 25.77 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 21.92 | 25.56 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 28.77 | 25.49 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 24.93 | 25.42 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 24.66 | 25.35 |
| CDY62419 | Canola | cytosol | 10.41 | 25.33 |
| EER92732 | Sorghum | golgi | 25.48 | 25.27 |
| CDY03116 | Canola | plasma membrane | 24.38 | 25.21 |
| Zm00001d031261_P001 | Maize | golgi | 26.03 | 25.2 |
| Zm00001d020789_P001 | Maize | plasma membrane | 27.4 | 25.13 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 19.73 | 25.09 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 24.38 | 25.07 |
| GSMUA_AchrUn_... | Banana | plastid | 24.66 | 25.0 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 24.11 | 24.79 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 27.4 | 24.75 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 19.45 | 24.74 |
| CDY12022 | Canola | plasma membrane | 23.84 | 24.65 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 26.03 | 24.61 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 27.12 | 24.5 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 15.89 | 24.47 |
| TraesCS6D01G113000.1 | Wheat | golgi | 26.85 | 24.44 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 26.85 | 24.14 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 20.82 | 24.13 |
| EES18560 | Sorghum | golgi, plasma membrane | 25.75 | 23.92 |
| CDY03202 | Canola | plasma membrane | 18.36 | 23.84 |
| CDY35174 | Canola | plasma membrane | 18.36 | 23.84 |
| CDX78812 | Canola | plasma membrane | 19.18 | 23.81 |
| CDY44502 | Canola | plasma membrane | 19.18 | 23.81 |
| Os03t0188200-01 | Rice | golgi | 23.01 | 23.8 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 23.56 | 23.76 |
| Os08t0484200-01 | Rice | golgi | 26.3 | 23.24 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.75 | 23.21 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 26.58 | 23.04 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.48 | 22.96 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 26.03 | 22.89 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.21 | 22.89 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 25.21 | 22.66 |
| Zm00001d048230_P001 | Maize | golgi | 23.56 | 22.63 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 27.4 | 22.62 |
| CDY01502 | Canola | plasma membrane | 18.36 | 22.56 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 26.03 | 22.46 |
| TraesCS7D01G178000.1 | Wheat | golgi | 24.93 | 22.3 |
| TraesCS7A01G176700.1 | Wheat | golgi | 25.21 | 22.17 |
| TraesCS7B01G081700.1 | Wheat | golgi | 24.93 | 21.98 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 23.29 | 21.96 |
| Zm00001d018122_P001 | Maize | vacuole | 25.21 | 21.96 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 26.03 | 21.74 |
| HORVU4Hr1G057610.1 | Barley | plastid | 24.38 | 21.6 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 22.19 | 20.93 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 21.92 | 20.89 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 24.66 | 20.69 |
| TraesCS4D01G200100.1 | Wheat | plastid | 23.29 | 20.53 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 16.44 | 19.8 |
| TraesCS4B01G199100.1 | Wheat | plastid | 23.84 | 19.46 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 27.4 | 18.35 |
| CDY13888 | Canola | plasma membrane | 18.08 | 17.84 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 18.08 | 17.79 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 20.0 | 17.55 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 14.25 | 17.28 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 17.81 | 16.97 |
| CDY05145 | Canola | plasma membrane | 13.7 | 16.84 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 18.63 | 16.67 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 18.63 | 16.63 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 15.62 | 16.15 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 18.08 | 15.83 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 18.08 | 15.83 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 17.81 | 15.66 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 17.81 | 15.48 |
| CDX70126 | Canola | plasma membrane | 16.99 | 15.38 |
| CDX90435 | Canola | nucleus | 18.36 | 10.91 |
| CDY31685 | Canola | cytosol | 0.55 | 9.09 |
| CDY05714 | Canola | cytosol | 3.29 | 5.63 |
Protein Annotations
| EnsemblPlants:CDX82176 | EnsemblPlantsGene:GSBRNA2T00137251001 | Gene3D:3.30.40.10 | GO:A0A078CYC8 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF414 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX82176 | ProteinID:CDX82176.1 | SEG:seg | SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI0004EF2BA2 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
BnaC02g21140D
Coordinates
chrLK031827:+:1678310..1679407
Molecular Weight (calculated)
41166.9 Da
IEP (calculated)
6.647
GRAVY (calculated)
-0.271
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLLNCTITG HHGSVLQLHL FLLLLSGHAS AQATHVESDM YEKSYRLDPT MKILMLVMAS VFFTLGFSSI SIRRWIERIT GMNNTHSVDA GGNWLSLSYP
101: QARGLEASVI ENFPTFQYST VKTLKINKEA LECPICLNEF EDAEILRLVP KCCHVFHTDC IDAWFQSHAT CPLCRANLVP VLGESVVSIQ IPGLTDDAPC
201: SELTGDRNTV LGSPDARLID SVALTCNQSM PRRSLSTGWN LAEIFTTSQH EGNLDRFTLR LPEDIHNKLV HRSHSKGHVA FPHMMSSSSG YRTRSLENDA
301: NYFYYERFDQ DGRLDRRPFS ITPPYRTCSM KSPFDWFFLE KNNIGERSSD HLRSGHDNSS GDQVV
101: QARGLEASVI ENFPTFQYST VKTLKINKEA LECPICLNEF EDAEILRLVP KCCHVFHTDC IDAWFQSHAT CPLCRANLVP VLGESVVSIQ IPGLTDDAPC
201: SELTGDRNTV LGSPDARLID SVALTCNQSM PRRSLSTGWN LAEIFTTSQH EGNLDRFTLR LPEDIHNKLV HRSHSKGHVA FPHMMSSSSG YRTRSLENDA
301: NYFYYERFDQ DGRLDRRPFS ITPPYRTCSM KSPFDWFFLE KNNIGERSSD HLRSGHDNSS GDQVV
001: MVVMSRVSFY SSFLLLLLEV VVASSEFDDE GRTSFSPTTA IIMIVLVSVF FALGCISVYM RRCLQHALGM DSGGGPGNWL NVRQTTEPGL DASVIETFPT
101: FPYSTVKTLR IGKEALECPV CLNEFEDDET LRLIPQCCHV FHPGCIDAWL RSQTTCPLCR ANLVPVPGES VSSEIPGLAR ETGQNSLRTP IDDNRKRVLT
201: SPDERLIDSV AWTGNQSMPR KSMSTGWKLA ELYSPASSPG QPEENLDRYT LRLPQEIHDQ LVNSSLGKQG SKGQLALPQE RSSVRGFRTG SLGTEKNYFY
301: FERFDQDGRL DRRPFSITPP YHTRSIQSPD EIINASGNYQ DRAGAPKGLL LAIRSPFDRL FTGKKNAGER SYLQSGDASP V
101: FPYSTVKTLR IGKEALECPV CLNEFEDDET LRLIPQCCHV FHPGCIDAWL RSQTTCPLCR ANLVPVPGES VSSEIPGLAR ETGQNSLRTP IDDNRKRVLT
201: SPDERLIDSV AWTGNQSMPR KSMSTGWKLA ELYSPASSPG QPEENLDRYT LRLPQEIHDQ LVNSSLGKQG SKGQLALPQE RSSVRGFRTG SLGTEKNYFY
301: FERFDQDGRL DRRPFSITPP YHTRSIQSPD EIINASGNYQ DRAGAPKGLL LAIRSPFDRL FTGKKNAGER SYLQSGDASP V
Arabidopsis Description
ATL15E3 ubiquitin-protein ligase ATL15 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK92]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.