Factsheet for TraesCS6A01G122800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

mitochondrion 3
golgi 3
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G113000.1	Wheat	golgi	93.35	94.51
TraesCS6B01G151000.1	Wheat	extracellular, golgi, plasma membrane	92.12	92.57
HORVU6Hr1G022590.1	Barley	golgi, mitochondrion	87.93	88.37
Os08t0484200-01	Rice	golgi	66.5	65.38
EES18560	Sorghum	golgi, plasma membrane	62.32	64.38
Zm00001d031261_P001	Maize	golgi	55.42	59.68
TraesCS5A01G248100.1	Wheat	plasma membrane	55.66	56.93
AT4G09100.1	Thale cress	extracellular	13.55	41.67
KRG92822	Soybean	endoplasmic reticulum, plasma membrane, vacuole	33.99	41.07
KRH33975	Soybean	golgi, plasma membrane, vacuole	34.73	39.28
CDY53236	Canola	plasma membrane	31.03	36.31
CDX75097	Canola	extracellular	12.32	36.23
KRG96857	Soybean	vacuole	33.25	36.0
CDY39477	Canola	extracellular	27.34	35.81
KRH68588	Soybean	plasma membrane	32.27	35.79
Bra010641.1-P	Field mustard	extracellular, golgi	26.85	35.39
CDX90377	Canola	extracellular, golgi	26.85	35.39
TraesCS7A01G176700.1	Wheat	golgi	35.96	35.18
Bra038386.1-P	Field mustard	extracellular	11.82	34.78
CDY48058	Canola	extracellular	11.82	34.78
CDY18787	Canola	plasma membrane	33.0	34.63
Bra040642.1-P	Field mustard	plasma membrane	32.76	34.46
AT3G05200.1	Thale cress	plasma membrane	33.74	34.42
KRH16796	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	31.53	33.77
VIT_14s0128g00120.t01	Wine grape	plasma membrane, plastid, vacuole	34.73	33.57
KRH72413	Soybean	cytosol, golgi, vacuole	30.54	33.16
KRH62285	Soybean	endoplasmic reticulum, plasma membrane, vacuole	27.59	32.94
TraesCS6A01G315600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	32.76	32.84
TraesCS2A01G318200.1	Wheat	endoplasmic reticulum, golgi, vacuole	30.54	32.63
Bra036631.1-P	Field mustard	plasma membrane	28.08	32.57
CDY19719	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.08	32.57
Bra039454.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	30.79	32.38
AT5G27420.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	29.31	32.34
KRH52998	Soybean	endoplasmic reticulum, extracellular, plasma membrane	26.6	32.34
Bra009962.1-P	Field mustard	mitochondrion, plastid	22.66	32.17
CDX99986	Canola	plasma membrane	27.59	32.09
CDX82175	Canola	extracellular	18.47	32.05
CDX80653	Canola	plasma membrane	23.89	32.01
Solyc03g112340.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	31.03	31.66
VIT_18s0001g06670.t01	Wine grape	extracellular, plasma membrane, vacuole	31.03	31.66
AT4G40070.1	Thale cress	extracellular, golgi, mitochondrion, plastid	25.12	31.58
CDX86163	Canola	plasma membrane	23.15	31.33
TraesCS3A01G051000.1	Wheat	vacuole	25.37	31.12
PGSC0003DMT400046825	Potato	endoplasmic reticulum, plasma membrane, vacuole	30.3	30.9
Bra009960.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	22.91	30.59
CDX86162	Canola	endoplasmic reticulum, plasma membrane, vacuole	22.91	30.59
CDX84270	Canola	cytosol, plastid, vacuole	23.4	30.35
TraesCS7A01G551400.1	Wheat	golgi, plastid	18.23	30.33
CDY25038	Canola	plasma membrane	27.59	30.27
TraesCS3A01G459700.1	Wheat	vacuole	25.37	30.12
Bra005375.1-P	Field mustard	cytosol, nucleus, plastid	23.15	30.03
CDY31656	Canola	cytosol, endoplasmic reticulum, plastid	23.15	30.03
CDY05577	Canola	plasma membrane	28.08	29.84
TraesCS4A01G104900.1	Wheat	mitochondrion	28.33	29.72
Bra020591.1-P	Field mustard	plasma membrane	27.83	29.66
TraesCS4A01G404600.1	Wheat	plasma membrane	25.86	29.58
AT2G35000.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	27.09	29.1
PGSC0003DMT400073575	Potato	extracellular, plasma membrane	31.03	29.1
Bra003887.1-P	Field mustard	endoplasmic reticulum, plasma membrane	25.62	28.97
AT1G35330.1	Thale cress	endoplasmic reticulum	23.15	28.66
TraesCS2A01G501100.1	Wheat	plastid	13.79	28.43
CDY70284	Canola	plasma membrane	27.09	28.28
AT4G09120.1	Thale cress	plasma membrane	23.89	28.12
KRH16794	Soybean	plasma membrane	27.09	28.06
KRH72412	Soybean	nucleus, plasma membrane, plastid	26.6	27.98
TraesCS1A01G192600.1	Wheat	plastid	14.29	27.49
CDY31657	Canola	extracellular, plasma membrane, plastid	24.88	27.45
AT1G72200.1	Thale cress	plasma membrane	27.09	27.23
CDX84269	Canola	endoplasmic reticulum, plasma membrane, plastid	24.63	27.17
PGSC0003DMT400005472	Potato	endoplasmic reticulum, plasma membrane, vacuole	26.11	27.11
CDX82179	Canola	plasma membrane	23.4	27.07
Bra008016.1-P	Field mustard	plasma membrane	26.85	27.05
CDY03651	Canola	plasma membrane	26.85	27.05
Bra001139.1-P	Field mustard	extracellular, golgi, plasma membrane	23.15	27.01
Bra005374.1-P	Field mustard	plasma membrane, plastid, vacuole	24.38	26.9
CDY62007	Canola	golgi, plasma membrane	24.88	26.86
AT2G34990.2	Thale cress	plasma membrane	21.43	26.85
CDX82176	Canola	extracellular	24.14	26.85
Bra000673.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	22.41	26.84
Bra040855.1-P	Field mustard	golgi, plasma membrane	24.63	26.6
CDY21367	Canola	golgi, plasma membrane	24.63	26.6
CDX90713	Canola	extracellular, golgi, plasma membrane	22.17	26.55
AT4G09110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	19.7	26.49
Solyc04g074820.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	25.62	26.46
Bra012330.1-P	Field mustard	golgi, plasma membrane	22.41	26.45
CDY05049	Canola	plasma membrane	18.97	26.37
CDY03116	Canola	plasma membrane	22.91	26.35
CDY12022	Canola	plasma membrane	22.91	26.35
Solyc12g087860.1.1	Tomato	vacuole	24.14	26.27
PGSC0003DMT400045807	Potato	plasma membrane	24.38	26.19
AT4G09130.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	22.91	26.05
Bra028075.1-P	Field mustard	plasma membrane	22.41	25.78
Bra008015.1-P	Field mustard	plasma membrane	24.63	25.25
CDY03652	Canola	plasma membrane	24.63	25.25
AT1G22500.1	Thale cress	plasma membrane	23.4	24.93
CDY27787	Canola	extracellular, plasma membrane, vacuole	18.47	24.92
CDY05145	Canola	plasma membrane	18.23	24.92
CDY70750	Canola	extracellular, mitochondrion, nucleus	17.73	23.76
CDY12527	Canola	extracellular, plasma membrane, vacuole	10.84	18.49
CDY25739	Canola	endoplasmic reticulum, extracellular, plasma membrane	10.84	18.49
TraesCS1A01G444900.1	Wheat	golgi, plasma membrane	17.24	17.81
CDY50446	Canola	mitochondrion	10.1	17.15

Protein Annotations

EnsemblPlants:TraesCS6A01G122800.1	EnsemblPlantsGene:TraesCS6A01G122800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF322	PFAM:PF13639	PFscan:PS50089	SEG:seg
SignalP:SignalP-TM	SMART:SM00184	SMART:SM01197	SUPFAM:SSF57850	TIGR:cd16454	TMHMM:TMhelix
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:96451626..96452936

Molecular Weight (calculated)

42405.3 Da

IEP (calculated)

8.655

GRAVY (calculated)

-0.150

Length

406 amino acids

Sequence
(BLAST)

001: MNPTRGRRNG GSSFLLVTIL VAAAADIAAA QQSGKGPSYF DPQNFNPSMA VIIVVLVTAF FFLGFFSIYI RRCAGGPLGG PGEDLGARPG VGGIAFLTSG
101: AARSRRMRGL DAAALEALPT MAYADVKAHK VGKGELECAV CLSEFDDDDT LRLLPKCSHA FHADCIDAWL ASHVTCPVCR ANLVPGADAP VASGAAAASA
201: TPERDDVAAT LAPQPAEETP TAPPEQVTVV ITDAAEETEE ERVRREEAAE LVRIGSVKRA LRSKSGRSPA AQFPRSHTTG HSLAAAPAES AERYTLRLPE
301: HVLREVVAAG KLRRTKSLQA FREGRAGGST RRGSRSVRLG QSGRWPAITM SSFLGLSFSA WGSSRRGEAE AAGKGGAKVA SDGTAAAEQQ QCDSGACPLP
401: LGGRRV

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.