Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 54.32 | 46.56 |
| AT4G09100.1 | Thale cress | extracellular | 15.74 | 38.64 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 37.35 | 36.89 |
| Bra005375.1-P | Field mustard | cytosol, nucleus, plastid | 35.19 | 36.42 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 35.19 | 36.42 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 34.88 | 36.1 |
| AT4G09120.1 | Thale cress | plasma membrane | 37.96 | 35.65 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 37.04 | 33.61 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 30.56 | 32.78 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 28.09 | 28.17 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 30.86 | 27.17 |
| AT3G05200.1 | Thale cress | plasma membrane | 33.02 | 26.88 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 28.4 | 26.74 |
| AT4G17920.1 | Thale cress | plasma membrane | 23.77 | 26.64 |
| Zm00001d020789_P001 | Maize | plasma membrane | 32.41 | 26.38 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 28.09 | 26.38 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 23.77 | 26.37 |
| Zm00001d005936_P001 | Maize | plasma membrane | 31.79 | 26.21 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 24.38 | 25.9 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 30.86 | 25.84 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 30.56 | 25.78 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 28.09 | 25.78 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 31.17 | 25.77 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 18.83 | 25.74 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 31.48 | 25.69 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 31.17 | 25.51 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 16.36 | 25.0 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 31.79 | 25.0 |
| AT1G22500.1 | Thale cress | plasma membrane | 29.01 | 24.67 |
| AT1G72200.1 | Thale cress | plasma membrane | 30.56 | 24.5 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 23.77 | 24.44 |
| AT5G46650.1 | Thale cress | plasma membrane | 21.6 | 24.22 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 28.7 | 23.97 |
| GSMUA_AchrUn_... | Banana | plastid | 26.54 | 23.89 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 28.09 | 23.58 |
| GSMUA_Achr10P... | Banana | plasma membrane | 28.09 | 23.45 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 25.62 | 23.18 |
| AT2G27940.1 | Thale cress | plasma membrane | 16.05 | 21.94 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 28.4 | 21.85 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 27.16 | 21.78 |
| TraesCS6D01G113000.1 | Wheat | golgi | 26.85 | 21.7 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.85 | 21.64 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 26.85 | 21.43 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 26.54 | 21.29 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.54 | 21.23 |
| TraesCS7D01G178000.1 | Wheat | golgi | 26.54 | 21.08 |
| TraesCS7B01G081700.1 | Wheat | golgi | 26.85 | 21.01 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 23.46 | 20.99 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.23 | 20.99 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 26.23 | 20.94 |
| EES18560 | Sorghum | golgi, plasma membrane | 25.31 | 20.87 |
| Zm00001d018122_P001 | Maize | vacuole | 26.85 | 20.76 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 22.84 | 20.73 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 26.54 | 20.72 |
| TraesCS7A01G176700.1 | Wheat | golgi | 26.54 | 20.72 |
| EER92732 | Sorghum | golgi | 23.46 | 20.65 |
| Os08t0484200-01 | Rice | golgi | 26.23 | 20.58 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 26.85 | 20.57 |
| Os03t0188200-01 | Rice | golgi | 22.22 | 20.4 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 27.78 | 20.36 |
| Zm00001d031261_P001 | Maize | golgi | 23.46 | 20.16 |
| Zm00001d048230_P001 | Maize | golgi | 23.46 | 20.0 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 21.91 | 20.0 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 21.6 | 19.72 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 21.3 | 19.44 |
| HORVU4Hr1G057610.1 | Barley | plastid | 24.69 | 19.42 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 15.12 | 19.29 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 25.62 | 18.99 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 22.53 | 18.86 |
| TraesCS4D01G200100.1 | Wheat | plastid | 23.77 | 18.6 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 24.69 | 18.39 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 21.91 | 18.35 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 20.68 | 17.49 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 22.22 | 17.31 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 28.7 | 17.06 |
| TraesCS4B01G199100.1 | Wheat | plastid | 23.46 | 17.0 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 18.83 | 15.64 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 19.14 | 14.35 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 17.9 | 14.25 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:818063 | UniProt:A0A178VMT5 | UniProt:A0A1P8AXK1 | ProteinID:AAC12838.1 |
| ProteinID:AEC09046.1 | ProteinID:ANM61388.1 | ArrayExpress:AT2G34990 | EnsemblPlantsGene:AT2G34990 | RefSeq:AT2G34990 | TAIR:AT2G34990 |
| RefSeq:AT2G34990-TAIR-G | EnsemblPlants:AT2G34990.2 | EMBL:DQ056567 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 |
| GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001323608.1 | RefSeq:NP_181044.1 |
| ProteinID:OAP07790.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF414 | SMART:SM00184 |
| SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0007DEE0EB | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34990]
Coordinates
chr2:-:14750242..14751326
Molecular Weight (calculated)
36713.4 Da
IEP (calculated)
6.897
GRAVY (calculated)
-0.275
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSFERNIRV LLQSVAYESS ETMVQPGTEI KASDLTLLVI TIILFAIFIV GLASVCFRWT SRQFYSQESI NPFTDSDVES RTSITAVRGL DEAIINSFPT
101: FLYSEVKERR IGIGGVECAV CICEFEDHET LRLMPECCHV FHADCVSVWL SDHSTCPLCR VDLCLQPGER SYLNPEPDLV ESTNSHLFDG VTWTNRNRPS
201: RSWSTRLSQC RVSQILISRS HSTGHSVVQP LDNLDRFTLR LPEEVRRQLT KKTVDNVAFS QARSSRRGYR SRSAGSERSV FSYQRRMHSF SDCAWSTSCG
301: GEAVAPSKDS RRISVEQSQL DDRV
101: FLYSEVKERR IGIGGVECAV CICEFEDHET LRLMPECCHV FHADCVSVWL SDHSTCPLCR VDLCLQPGER SYLNPEPDLV ESTNSHLFDG VTWTNRNRPS
201: RSWSTRLSQC RVSQILISRS HSTGHSVVQP LDNLDRFTLR LPEEVRRQLT KKTVDNVAFS QARSSRRGYR SRSAGSERSV FSYQRRMHSF SDCAWSTSCG
301: GEAVAPSKDS RRISVEQSQL DDRV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.