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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi

Predictor Summary:
  • nucleus 2
  • extracellular 4
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 5
  • golgi 5
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane
Any Predictor:nucleus, peroxisome, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:peroxisome
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d031261_P001 Maize golgi 75.83 79.05
TraesCS6D01G113000.1 Wheat golgi 63.87 62.59
TraesCS6A01G122800.1 Wheat endoplasmic reticulum, golgi, mitochondrion 64.38 62.32
TraesCS6B01G151000.1 Wheat extracellular, golgi, plasma membrane 63.61 61.88
Os08t0484200-01 Rice golgi 64.89 61.74
HORVU6Hr1G022590.1 Barley golgi, mitochondrion 62.85 61.14
EER99041 Sorghum endoplasmic reticulum, plasma membrane 54.71 52.18
AT4G09100.1 Thale cress extracellular 13.23 39.39
KRG92822 Soybean endoplasmic reticulum, plasma membrane, vacuole 33.33 38.99
KRH33975 Soybean golgi, plasma membrane, vacuole 33.08 36.21
CDY39477 Canola extracellular 27.48 34.84
Bra010641.1-P Field mustard extracellular, golgi 26.97 34.42
CDX90377 Canola extracellular, golgi 26.97 34.42
CDX75097 Canola extracellular 11.96 34.06
CDY53236 Canola plasma membrane 30.03 34.01
KRH72413 Soybean cytosol, golgi, vacuole 32.32 33.96
KRH68588 Soybean plasma membrane 31.55 33.88
KRH16796 Soybean cytosol, endoplasmic reticulum, plasma membrane, plastid 32.57 33.77
KXG26428 Sorghum plasma membrane 34.86 33.74
KRG96857 Soybean vacuole 32.06 33.6
KRH62285 Soybean endoplasmic reticulum, plasma membrane, vacuole 28.24 32.65
Bra038386.1-P Field mustard extracellular 11.45 32.61
CDY48058 Canola extracellular 11.45 32.61
AT4G40070.1 Thale cress extracellular, golgi, mitochondrion, plastid 26.72 32.51
Bra040642.1-P Field mustard plasma membrane 31.55 32.12
CDX82175 Canola extracellular 19.08 32.05
CDY18787 Canola plasma membrane 31.55 32.04
KRH52998 Soybean endoplasmic reticulum, extracellular, plasma membrane 27.23 32.04
OQU85775 Sorghum golgi, plasma membrane, vacuole 34.35 31.91
EER92732 Sorghum golgi 29.52 31.52
EES05293 Sorghum endoplasmic reticulum, golgi, plastid 30.03 31.22
AT5G27420.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 28.75 30.71
CDX84270 Canola cytosol, plastid, vacuole 24.43 30.67
AT3G05200.1 Thale cress plasma membrane 31.04 30.65
VIT_18s0001g06670.t01 Wine grape extracellular, plasma membrane, vacuole 31.04 30.65
Bra036631.1-P Field mustard plasma membrane 27.23 30.57
CDY19719 Canola endoplasmic reticulum, plasma membrane, vacuole 27.23 30.57
VIT_14s0128g00120.t01 Wine grape plasma membrane, plastid, vacuole 32.57 30.48
Bra005375.1-P Field mustard cytosol, nucleus, plastid 23.92 30.03
CDY31656 Canola cytosol, endoplasmic reticulum, plastid 23.92 30.03
Solyc03g112340.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 30.28 29.9
CDX99986 Canola plasma membrane 26.46 29.8
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 22.9 29.61
CDX86162 Canola endoplasmic reticulum, plasma membrane, vacuole 22.9 29.61
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 29.01 29.53
CDX80653 Canola plasma membrane 22.65 29.37
Bra009962.1-P Field mustard mitochondrion, plastid 21.37 29.37
PGSC0003DMT400046825 Potato endoplasmic reticulum, plasma membrane, vacuole 29.52 29.15
CDY25038 Canola plasma membrane 27.23 28.92
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 25.95 28.41
CDX86163 Canola plasma membrane 21.63 28.33
CDY05577 Canola plasma membrane 27.48 28.27
CDY31657 Canola extracellular, plasma membrane, plastid 26.46 28.26
CDX84269 Canola endoplasmic reticulum, plasma membrane, plastid 26.21 27.99
PGSC0003DMT400073575 Potato extracellular, plasma membrane 30.79 27.94
Bra020591.1-P Field mustard plasma membrane 26.97 27.82
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 25.95 27.72
OQU76061 Sorghum cytosol, peroxisome, plasma membrane 38.42 27.71
AT2G35000.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 26.21 27.25
KRH72412 Soybean nucleus, plasma membrane, plastid 26.72 27.2
AT1G35330.1 Thale cress endoplasmic reticulum 22.65 27.13
KXG39223 Sorghum golgi, plasma membrane, plastid, vacuole 26.72 27.13
KRH16794 Soybean plasma membrane 26.97 27.04
Bra040855.1-P Field mustard golgi, plasma membrane 25.7 26.86
CDY21367 Canola golgi, plasma membrane 25.7 26.86
CDY62007 Canola golgi, plasma membrane 25.7 26.86
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 26.72 26.85
CDY70284 Canola plasma membrane 26.46 26.74
CDX82179 Canola plasma membrane 23.66 26.5
Solyc04g074820.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 26.21 26.21
AT4G09120.1 Thale cress plasma membrane 22.9 26.09
AT1G72200.1 Thale cress plasma membrane 26.72 25.99
Bra008016.1-P Field mustard plasma membrane 26.46 25.81
CDY03651 Canola plasma membrane 26.46 25.81
CDX82176 Canola extracellular 23.92 25.75
Bra012330.1-P Field mustard golgi, plasma membrane 22.39 25.58
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 21.88 25.37
AT2G34990.2 Thale cress plasma membrane 20.87 25.31
AT4G09110.1 Thale cress endoplasmic reticulum, extracellular, golgi 19.34 25.17
CDX90713 Canola extracellular, golgi, plasma membrane 21.63 25.07
CDY05049 Canola plasma membrane 18.58 25.0
AT1G22500.1 Thale cress plasma membrane 24.17 24.93
Solyc12g087860.1.1 Tomato vacuole 23.66 24.93
OQU92087 Sorghum golgi, peroxisome, plastid 15.78 24.9
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 21.88 24.71
CDY12022 Canola plasma membrane 22.14 24.65
AT4G09130.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 22.14 24.37
Bra028075.1-P Field mustard plasma membrane 21.88 24.36
PGSC0003DMT400045807 Potato plasma membrane 23.41 24.34
Bra008015.1-P Field mustard plasma membrane 24.43 24.24
CDY03652 Canola plasma membrane 24.43 24.24
OQU82489 Sorghum plasma membrane, vacuole 14.5 24.05
CDY03116 Canola plasma membrane 21.37 23.8
CDY05145 Canola plasma membrane 16.79 22.22
CDY27787 Canola extracellular, plasma membrane, vacuole 16.79 21.93
CDY70750 Canola extracellular, mitochondrion, nucleus 16.29 21.12
CDY12527 Canola extracellular, plasma membrane, vacuole 10.69 17.65
EER90301 Sorghum endoplasmic reticulum, golgi, vacuole 17.81 17.41
CDY25739 Canola endoplasmic reticulum, extracellular, plasma membrane 10.43 17.23
EES18815 Sorghum endoplasmic reticulum, extracellular, plasma membrane 20.1 16.7
CDY50446 Canola mitochondrion 8.91 14.64
Protein Annotations
MapMan:19.2.2.1.5.3.3Gene3D:3.30.40.10EntrezGene:8061050UniProt:C5YUG4EnsemblPlants:EES18560ProteinID:EES18560
ProteinID:EES18560.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016567
GO:GO:0016740GO:GO:0019538GO:GO:0043161GO:GO:0061630InterPro:IPR001841InterPro:IPR013083
PFAM:PF13639PFscan:PS50089PANTHER:PTHR14155PANTHER:PTHR14155:SF322SMART:SM00184SMART:SM01197
EnsemblPlantsGene:SORBI_3009G209500SUPFAM:SSF57850SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0001A88C6BRefSeq:XP_002440130.1
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:seg:::
Description
hypothetical protein
Coordinates
chr9:+:55627257..55628438
Molecular Weight (calculated)
41571.4 Da
IEP (calculated)
8.702
GRAVY (calculated)
-0.211
Length
393 amino acids
Sequence
(BLAST)
001: MGPINGRRLK LLAAVALAGA AVDSVTAQQG KGPDYFNPKN FNPSMAIVMV VLVTAFFLLG FFSIYLRRCA GPPLGGPDDD DEYPVGLGRR PGVGFTYASA
101: SRSRRMRGLD RAVLDSFPTM AYADVRAHKA GKGALECAVC LCEFDDDDTL RLLPRCAHAF HTDCIDAWLA SHVTCPVCRA VLAAPDAADA PAAPATERDQ
201: VVPPVPAAPP DQAVVDADAA AGETEDQRVR REEAAELMRI GSVKRALALR GKSGRRPAQF PRSHTTGHSL AVAAPSHSPS STLDSERYTL RLPDHVLREA
301: IAAGNLRRSA SVQTGGDGTT TRRGYGRSVR LGNSGRWSNM SLLARTFSAR LPVWGSVRRG EADAPAKGAK FAGDDGKAVE QCDGGACSLG AHV
Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.