Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 6
- vacuole 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g112340.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 94.97 | 94.97 |
| PGSC0003DMT400073575 | Potato | extracellular, plasma membrane | 65.08 | 59.82 |
| KRG92822 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 39.7 | 47.02 |
| KRH33975 | Soybean | golgi, plasma membrane, vacuole | 41.21 | 45.68 |
| KRG96857 | Soybean | vacuole | 40.7 | 43.2 |
| KRH68588 | Soybean | plasma membrane | 38.69 | 42.08 |
| VIT_14s0128g00120.t01 | Wine grape | plasma membrane, plastid, vacuole | 42.96 | 40.71 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 30.4 | 39.67 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 33.92 | 39.13 |
| Bra040642.1-P | Field mustard | plasma membrane | 37.94 | 39.12 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 35.93 | 38.86 |
| Bra036631.1-P | Field mustard | plasma membrane | 33.67 | 38.29 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 33.92 | 38.24 |
| AT3G05200.1 | Thale cress | plasma membrane | 37.19 | 37.19 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 27.14 | 36.99 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 33.17 | 36.87 |
| Bra009960.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 27.89 | 36.51 |
| Bra039454.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 35.18 | 36.27 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 31.16 | 36.05 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 35.18 | 35.71 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 34.67 | 35.66 |
| Zm00001d005936_P001 | Maize | plasma membrane | 34.92 | 35.37 |
| Bra009962.1-P | Field mustard | mitochondrion, plastid | 25.38 | 35.31 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 33.92 | 35.16 |
| GSMUA_Achr10P... | Banana | plasma membrane | 34.17 | 35.05 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 34.67 | 34.85 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 34.67 | 34.76 |
| PGSC0003DMT400001221 | Potato | vacuole | 16.33 | 34.76 |
| Bra020591.1-P | Field mustard | plasma membrane | 33.17 | 34.65 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 35.18 | 33.98 |
| Zm00001d020789_P001 | Maize | plasma membrane | 33.92 | 33.92 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 31.91 | 32.73 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 31.66 | 32.64 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 17.34 | 32.55 |
| GSMUA_AchrUn_... | Banana | plastid | 29.4 | 32.5 |
| PGSC0003DMT400005472 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 31.91 | 32.48 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 25.38 | 32.06 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 18.59 | 31.22 |
| TraesCS6D01G113000.1 | Wheat | golgi | 30.65 | 30.42 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 30.9 | 30.3 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 30.65 | 30.2 |
| Bra001139.1-P | Field mustard | extracellular, golgi, plasma membrane | 26.38 | 30.17 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 30.15 | 29.7 |
| EES18560 | Sorghum | golgi, plasma membrane | 29.15 | 29.52 |
| Zm00001d031261_P001 | Maize | golgi | 27.64 | 29.18 |
| Os08t0484200-01 | Rice | golgi | 29.9 | 28.81 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 25.38 | 28.45 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 25.38 | 28.29 |
| Zm00001d018122_P001 | Maize | vacuole | 29.65 | 28.16 |
| PGSC0003DMT400045807 | Potato | plasma membrane | 26.63 | 28.04 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 29.15 | 27.95 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 24.87 | 27.89 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 29.4 | 27.79 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 24.62 | 27.61 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 27.14 | 26.87 |
| TraesCS7B01G081700.1 | Wheat | golgi | 27.89 | 26.81 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 28.39 | 26.71 |
| EER92732 | Sorghum | golgi | 24.62 | 26.63 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 25.88 | 26.61 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 29.15 | 26.54 |
| TraesCS7D01G178000.1 | Wheat | golgi | 27.14 | 26.47 |
| TraesCS7A01G176700.1 | Wheat | golgi | 27.39 | 26.27 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 29.15 | 26.24 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.38 | 25.93 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.38 | 25.93 |
| Os03t0188200-01 | Rice | golgi | 22.86 | 25.78 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 26.13 | 25.62 |
| TraesCS4D01G200100.1 | Wheat | plastid | 26.63 | 25.6 |
| HORVU4Hr1G057610.1 | Barley | plastid | 26.38 | 25.49 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 22.61 | 24.86 |
| Zm00001d048230_P001 | Maize | golgi | 23.62 | 24.74 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 23.87 | 24.55 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 23.12 | 24.02 |
| TraesCS4B01G199100.1 | Wheat | plastid | 26.38 | 23.49 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 23.62 | 22.6 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 30.4 | 22.2 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 23.87 | 21.84 |
| PGSC0003DMT400070587 | Potato | plastid | 18.09 | 20.93 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 17.84 | 19.19 |
| PGSC0003DMT400078951 | Potato | plasma membrane | 18.84 | 17.77 |
Protein Annotations
| EntrezGene:102578856 | MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EMBL:AB061244 | ProteinID:BAC23030 | ProteinID:BAC23030.1 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M1BJP9 |
| PFAM:PF13639 | EnsemblPlantsGene:PGSC0003DMG400018182 | PGSC:PGSC0003DMG400018182 | EnsemblPlants:PGSC0003DMT400046825 | PFscan:PS50089 | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF414 | SMART:SM00184 | SUPFAM:SSF57850 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000294F5FB |
| RefSeq:XP_006344460.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018182]
Coordinates
chr3:+:52128924..52130643
Molecular Weight (calculated)
44745.4 Da
IEP (calculated)
8.797
GRAVY (calculated)
-0.455
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNFKAISVN LFLLVLLCPA SAQPSNSPDS ENRFEYPSVS PAMAIIIVIL IAALFFIAFF SIYIRNRGAT NGSIRQTFSM RRRTAAATRG LEDSVIETFP
101: TFTYVEVKDH HIGKGALECA VCLNEFEDDE MLRLIPKCDH VFHPECIDAW LKSHVTCPVC RADLTPKPDE PVPVQTPDTN RELGQEQENL QQNNEVSIQI
201: EVDEDLMSQQ EESSVRPEVK RNLSFNAVNR PPRSFSVKRP KMFSKFRSHS TGHSLVVPGE NLDRYTLRLP EKVRKDVMDR ALLNRTRSCA VTLPRHGSTT
301: RGYRAGPGEG SNRGTRSFKR IDRFDPEAKS DRWFLKIAPP FFTRGSSMKS PKVRADNEEA STSRSNVKVA VKMPSFKCLE PKGDEPGLLA NDSARSPV
101: TFTYVEVKDH HIGKGALECA VCLNEFEDDE MLRLIPKCDH VFHPECIDAW LKSHVTCPVC RADLTPKPDE PVPVQTPDTN RELGQEQENL QQNNEVSIQI
201: EVDEDLMSQQ EESSVRPEVK RNLSFNAVNR PPRSFSVKRP KMFSKFRSHS TGHSLVVPGE NLDRYTLRLP EKVRKDVMDR ALLNRTRSCA VTLPRHGSTT
301: RGYRAGPGEG SNRGTRSFKR IDRFDPEAKS DRWFLKIAPP FFTRGSSMKS PKVRADNEEA STSRSNVKVA VKMPSFKCLE PKGDEPGLLA NDSARSPV
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.