Factsheet for PGSC0003DMT400070587

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 2
nucleus 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g018310.1.1	Tomato	extracellular, plasma membrane, vacuole	82.27	87.35
PGSC0003DMT400000810	Potato	plasma membrane	55.23	51.35
KRH39345	Soybean	endoplasmic reticulum, vacuole	59.3	48.69
KRH76331	Soybean	endoplasmic reticulum	59.3	47.89
VIT_11s0016g03420.t01	Wine grape	plastid	61.34	44.99
CDY05713	Canola	extracellular	19.19	44.9
AT2G20030.1	Thale cress	endoplasmic reticulum, plasma membrane	50.58	44.62
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	53.78	44.05
CDY50930	Canola	endoplasmic reticulum, plasma membrane	53.78	44.05
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	52.91	43.65
CDY06859	Canola	endoplasmic reticulum, plasma membrane	52.62	43.41
CDX92900	Canola	endoplasmic reticulum, plasma membrane	52.33	43.37
CDY35230	Canola	endoplasmic reticulum, plasma membrane	52.33	43.17
CDY13888	Canola	plasma membrane	46.22	42.97
CDY35921	Canola	endoplasmic reticulum, extracellular, plasma membrane	46.22	42.86
CDX97460	Canola	endoplasmic reticulum, extracellular, plasma membrane	50.58	42.65
CDX81954	Canola	endoplasmic reticulum, plasma membrane, vacuole	47.09	42.3
CDY66475	Canola	endoplasmic reticulum, plasma membrane	50.0	42.05
AT4G28890.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	52.62	41.9
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	50.87	41.67
GSMUA_Achr9P00230_001	Banana	vacuole	43.02	40.22
GSMUA_Achr6P26720_001	Banana	plasma membrane	40.99	40.17
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	42.15	39.51
GSMUA_Achr4P08120_001	Banana	plasma membrane	39.24	37.6
GSMUA_Achr6P22700_001	Banana	plasma membrane	25.0	36.13
CDY05714	Canola	cytosol	22.09	35.68
Os05t0596500-01	Rice	endoplasmic reticulum, plasma membrane	37.79	33.77
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	37.79	32.99
TraesCS1A01G444900.1	Wheat	golgi, plasma membrane	36.63	32.06
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	36.34	31.97
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	36.63	30.96
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	38.37	30.41
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	37.79	30.09
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	40.12	29.18
PGSC0003DMT400001221	Potato	vacuole	14.83	27.27
PGSC0003DMT400078951	Potato	plasma membrane	33.14	27.01
PGSC0003DMT400046825	Potato	endoplasmic reticulum, plasma membrane, vacuole	20.93	18.09
PGSC0003DMT400073575	Potato	extracellular, plasma membrane	21.51	17.09
PGSC0003DMT400005472	Potato	endoplasmic reticulum, plasma membrane, vacuole	18.6	16.37
PGSC0003DMT400045807	Potato	plasma membrane	17.15	15.61

Protein Annotations

EnsemblPlants:PGSC0003DMT400070587	EnsemblPlantsGene:PGSC0003DMG400027436	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF95
PFAM:PF13639	PFscan:PS50089	PGSC:PGSC0003DMG400027436	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI000294CFD4	UniProt:M1CME1	MapMan:19.2.2.1.5.3.3	:	:

Description

Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027436]

Coordinates

chr5:-:18897472..18898506

Molecular Weight (calculated)

40054.1 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.287

Length

344 amino acids

Sequence
(BLAST)

001: MLLLLSLNVK AEDLPTSSSQ DVVSSFQPSL AVVIGVLFIM FSLTFFLLLY AKFCHTASSH IQNDGGLVRS VSRSSGIDKT VVESLPFFRF SLLRGSKQGL
101: ECCVCLSKFE DIEILRLIPM CKHAFHINCI DQWLEKHSTC PLCRHKISCE DLSLLTYSDS LRFLWSQSEE LVRDDESNLE IYIEREENGT EELPIQEKEL
201: HRFNHRIIVS DVVFKNRWSN VTSSDLIFLN SEMLNGMTSN RFSSMDRNAE QSTVIEEEQS INIKDEMERK RLFDSKLIKS KCLVADEKRS MSEIILYSRF
301: NNRNRELSVR DERRRKLWLP IARRTVKWFA NRERTENTTQ TLNV

Best Arabidopsis Sequence Match ( AT2G20030.1 )
(BLAST)

001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV

Arabidopsis Description

ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.