Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 85.45 | 49.06 |
| CDY13888 | Canola | plasma membrane | 66.2 | 38.11 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 67.14 | 37.34 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 64.32 | 35.13 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 55.4 | 28.3 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 55.4 | 28.3 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 53.99 | 28.12 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 55.4 | 28.1 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 53.52 | 27.94 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 53.05 | 27.23 |
| PGSC0003DMT400070587 | Potato | plastid | 35.68 | 22.09 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 32.86 | 21.6 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 38.5 | 19.57 |
| KRH76331 | Soybean | endoplasmic reticulum | 38.03 | 19.01 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 38.97 | 17.7 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 29.58 | 16.54 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 28.64 | 16.49 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 25.35 | 15.38 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 26.29 | 15.26 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 25.82 | 14.95 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 24.88 | 14.76 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 26.76 | 14.5 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 26.76 | 14.47 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 28.17 | 13.82 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 27.7 | 13.66 |
| Zm00001d039216_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 24.88 | 13.55 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 22.54 | 12.47 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 25.82 | 11.63 |
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 21.13 | 11.06 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 15.96 | 9.63 |
| CDX70126 | Canola | plasma membrane | 15.96 | 8.44 |
| CDY05145 | Canola | plasma membrane | 9.86 | 7.07 |
| CDY62419 | Canola | cytosol | 4.69 | 6.67 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 9.39 | 6.64 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 9.39 | 6.6 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 8.92 | 6.07 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 8.92 | 6.07 |
| CDY50446 | Canola | mitochondrion | 6.57 | 5.86 |
| CDY31686 | Canola | nucleus | 2.82 | 5.71 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 7.98 | 5.59 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 6.1 | 5.46 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 6.1 | 5.46 |
| CDX80653 | Canola | plasma membrane | 7.51 | 5.28 |
| CDY53236 | Canola | plasma membrane | 8.45 | 5.19 |
| CDY18787 | Canola | plasma membrane | 9.39 | 5.17 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 8.92 | 5.16 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 8.45 | 4.89 |
| CDX99986 | Canola | plasma membrane | 7.98 | 4.87 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 7.98 | 4.86 |
| CDY01502 | Canola | plasma membrane | 6.57 | 4.71 |
| CDY31685 | Canola | cytosol | 0.47 | 4.55 |
| CDX90377 | Canola | extracellular, golgi | 6.57 | 4.55 |
| CDY39477 | Canola | extracellular | 6.57 | 4.52 |
| CDX86163 | Canola | plasma membrane | 6.1 | 4.33 |
| CDY25038 | Canola | plasma membrane | 7.51 | 4.32 |
| CDY62007 | Canola | golgi, plasma membrane | 7.51 | 4.26 |
| CDY21367 | Canola | golgi, plasma membrane | 7.51 | 4.26 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 5.63 | 4.18 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 5.63 | 4.18 |
| CDY05577 | Canola | plasma membrane | 7.04 | 3.93 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 6.1 | 3.83 |
| CDY44502 | Canola | plasma membrane | 5.16 | 3.74 |
| CDX78812 | Canola | plasma membrane | 5.16 | 3.74 |
| CDY03202 | Canola | plasma membrane | 4.69 | 3.56 |
| CDY35174 | Canola | plasma membrane | 4.69 | 3.56 |
| CDY05713 | Canola | extracellular | 2.35 | 3.4 |
| CDY12022 | Canola | plasma membrane | 5.63 | 3.4 |
| CDY03116 | Canola | plasma membrane | 5.63 | 3.4 |
| CDX82176 | Canola | extracellular | 5.63 | 3.29 |
| CDX82179 | Canola | plasma membrane | 5.16 | 3.13 |
| CDY70284 | Canola | plasma membrane | 5.63 | 3.08 |
| CDY03652 | Canola | plasma membrane | 5.63 | 3.03 |
| CDY03651 | Canola | plasma membrane | 5.63 | 2.98 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 3.29 | 2.94 |
| CDY05049 | Canola | plasma membrane | 3.76 | 2.74 |
| CDX90435 | Canola | nucleus | 5.63 | 1.95 |
| CDX82175 | Canola | extracellular | 1.88 | 1.71 |
| CDY48058 | Canola | extracellular | 0.47 | 0.72 |
| CDX75097 | Canola | extracellular | 0.47 | 0.72 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY05714 | EnsemblPlantsGene:GSBRNA2T00120743001 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF220 | ProteinID:CDY05714 | ProteinID:CDY05714.1 |
| SEG:seg | UniParc:UPI0004EF0604 | MapMan:35.1 | : | : | : |
Description
BnaC07g00890D
Coordinates
chrLK031964:+:163339..167335
Molecular Weight (calculated)
24276.7 Da
IEP (calculated)
10.321
GRAVY (calculated)
-0.757
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIMSQISET REEDSGMDIY IEREEGEDSS RFSSFRKILK FGKNDKSLSL VEQGNEKRMH KFNHRIVVSD VVFKNRWSNV TPSDLTRLTS NMLGSMSSER
101: FSSMDGVERG DLRDKEVLEM KRIVKNKDST RRVVSEITAV PRLSVLEVTT STRENAVGGN DGGLAASTAS TSRSDAIAAT EERRRQLWLP IARRTAHWFA
201: NREKMNELNT TKP
101: FSSMDGVERG DLRDKEVLEM KRIVKNKDST RRVVSEITAV PRLSVLEVTT STRENAVGGN DGGLAASTAS TSRSDAIAAT EERRRQLWLP IARRTAHWFA
201: NREKMNELNT TKP
001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
Arabidopsis Description
ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.