Factsheet for GSMUA_Achr4P08120_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P26720_001	Banana	plasma membrane	54.32	55.56
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	52.92	51.77
GSMUA_Achr9P00230_001	Banana	vacuole	50.97	49.73
GSMUA_Achr8P09280_001	Banana	cytosol	5.57	41.67
CDY05713	Canola	extracellular	16.43	40.14
PGSC0003DMT400070587	Potato	plastid	37.6	39.24
Solyc05g018310.1.1	Tomato	extracellular, plasma membrane, vacuole	35.38	39.2
GSMUA_Achr6P22700_001	Banana	plasma membrane	24.23	36.55
Os05t0596500-01	Rice	endoplasmic reticulum, plasma membrane	38.44	35.84
PGSC0003DMT400000810	Potato	plasma membrane	36.21	35.14
Solyc12g007320.1.1	Tomato	plasma membrane	37.05	34.91
CDX81954	Canola	endoplasmic reticulum, plasma membrane, vacuole	36.21	33.94
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	36.49	33.5
CDY35921	Canola	endoplasmic reticulum, extracellular, plasma membrane	34.54	33.42
AT2G20030.1	Thale cress	endoplasmic reticulum, plasma membrane	36.21	33.33
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	36.49	33.25
CDY13888	Canola	plasma membrane	34.26	33.24
KRH62061	Soybean	plastid	25.07	33.21
CDX97460	Canola	endoplasmic reticulum, extracellular, plasma membrane	37.6	33.09
TraesCS1A01G444900.1	Wheat	golgi, plasma membrane	36.21	33.08
CDY66475	Canola	endoplasmic reticulum, plasma membrane	37.6	33.01
KRH16295	Soybean	plasma membrane	35.93	32.66
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	38.16	32.62
CDY06859	Canola	endoplasmic reticulum, plasma membrane	37.6	32.37
KRH52730	Soybean	golgi, plasma membrane, vacuole	36.77	32.2
CDY50930	Canola	endoplasmic reticulum, plasma membrane	37.6	32.14
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	37.6	32.14
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	37.33	32.13
CDX92900	Canola	endoplasmic reticulum, plasma membrane	37.05	32.05
KRH76331	Soybean	endoplasmic reticulum	37.88	31.92
CDY35230	Canola	endoplasmic reticulum, plasma membrane	37.05	31.89
KRH39345	Soybean	endoplasmic reticulum, vacuole	37.05	31.74
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	35.93	31.7
AT4G28890.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	37.33	31.02
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	36.49	30.32
VIT_11s0016g03420.t01	Wine grape	plastid	39.55	30.28
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	36.49	30.18
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	38.72	29.39
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	28.69	27.99
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	28.13	26.3
CDY05714	Canola	cytosol	14.76	24.88
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	11.14	23.81
GSMUA_Achr4P12270_001	Banana	plastid	11.14	23.12
GSMUA_Achr5P17910_001	Banana	golgi, plasma membrane, vacuole	21.73	22.61
GSMUA_AchrUn_...	Banana	plastid	20.61	20.56
GSMUA_Achr1P17360_001	Banana	nucleus, plasma membrane, plastid	13.93	19.84
GSMUA_Achr6P30500_001	Banana	plasma membrane	15.88	19.52
GSMUA_Achr3P20400_001	Banana	mitochondrion	18.66	19.48
GSMUA_Achr7P12810_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	16.43	19.34
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	18.94	19.26
GSMUA_Achr10P...	Banana	plasma membrane	19.78	18.3
GSMUA_Achr3P06680_001	Banana	mitochondrion, plastid	18.66	17.27
GSMUA_Achr9P15010_001	Banana	endoplasmic reticulum, plasma membrane	16.43	16.48

Protein Annotations

EnsemblPlants:GSMUA_Achr4P08120_001	EnsemblPlants:GSMUA_Achr4T08120_001	EnsemblPlantsGene:GSMUA_Achr4G08120_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF431	PFAM:PF13639	PFscan:PS50089	SEG:seg	SignalP:SignalP-TM	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000295D1CA	UniProt:M0SM29	MapMan:19.2.2.1.5.3.3	:

Description

Putative RING-H2 finger protein ATL12 [Source:GMGC_GENE;Acc:GSMUA_Achr4G08120_001]

Coordinates

chr4:-:6030755..6032026

Molecular Weight (calculated)

39613.3 Da

IEP (calculated)

8.499

GRAVY (calculated)

-0.101

Length

359 amino acids

Sequence
(BLAST)

001: MPSLDNTPFS LRFVFFLVLL VPATVASAQH ADAEYLPSET AKVSFGPSVA IAIGVFATML SLTVLLLVYV KCRWSMPSES IIPAPTRQTR HQLSGIDRTV
101: VESIPFFRFA SLRGVRDGLE CAVCISKFDG DEVLRLLPKC KHAFHIDCVD RWLEGHSSCP LCRCKVTAVD VARFAYSTSS RFLFASGQHE TSGRELELFK
201: EKLPILEEAT GGDQFLHKFK HRIVVSDNVF KGRWSALNSS DLASLTSDML SITLLEAKVN QIGALTSATN PNIPSPSNDN GNLISPASRA SISSANRSMS
301: DITNLSRSRQ ERDPGNSTSS RDEDEKLRRL WLPIARRTVQ CFAGRSDRRL STATEISNV

Best Arabidopsis Sequence Match ( AT2G20030.1 )
(BLAST)

001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV

Arabidopsis Description

ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.