Factsheet for GSMUA_AchrUn_randomP25140_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P12270_001	Banana	plastid	58.93	57.23
GSMUA_Achr8P09280_001	Banana	cytosol	10.12	35.42
Os10t0574400-01	Rice	mitochondrion, plasma membrane, plastid	33.93	28.64
TraesCS1A01G192600.1	Wheat	plastid	35.12	27.96
Zm00001d030038_P001	Maize	plastid	36.9	26.72
OQU92087	Sorghum	golgi, peroxisome, plastid	38.1	25.7
KRH53320	Soybean	mitochondrion	14.29	22.64
PGSC0003DMT400001221	Potato	vacuole	21.43	19.25
CDY62419	Canola	cytosol	16.07	18.0
AT2G35420.1	Thale cress	plasma membrane, plastid	26.79	17.72
Solyc11g066510.1.1	Tomato	nucleus	23.81	16.95
KRH14610	Soybean	endoplasmic reticulum, nucleus, plastid	17.26	16.48
Bra005343.1-P	Field mustard	plastid	25.6	15.41
GSMUA_Achr7P12810_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	27.98	15.41
GSMUA_Achr6P30500_001	Banana	plasma membrane	26.19	15.07
KRH31340	Soybean	endoplasmic reticulum, plasma membrane	19.64	14.67
GSMUA_Achr5P17910_001	Banana	golgi, plasma membrane, vacuole	29.76	14.49
GSMUA_Achr1P17360_001	Banana	nucleus, plasma membrane, plastid	20.83	13.89
GSMUA_Achr6P22700_001	Banana	plasma membrane	19.64	13.87
GSMUA_Achr3P20400_001	Banana	mitochondrion	27.98	13.66
GSMUA_AchrUn_...	Banana	plastid	29.17	13.61
GSMUA_Achr9P15010_001	Banana	endoplasmic reticulum, plasma membrane	27.98	13.13
Bra017320.1-P	Field mustard	extracellular, nucleus, plasma membrane	26.19	13.1
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	26.79	12.75
GSMUA_Achr10P...	Banana	plasma membrane	27.38	11.86
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	25.0	11.41
GSMUA_Achr3P06680_001	Banana	mitochondrion, plastid	26.19	11.34
GSMUA_Achr4P08120_001	Banana	plasma membrane	23.81	11.14
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	25.0	10.94
GSMUA_Achr6P26720_001	Banana	plasma membrane	20.83	9.97
GSMUA_Achr9P00230_001	Banana	vacuole	21.43	9.78
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	20.83	9.54

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP25140_001	EnsemblPlants:GSMUA_AchrUn_randomT25140_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG25140_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF281	PFAM:PF17123	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI000294ADF1	UniProt:M0UC72	MapMan:19.2.2.1.5.3.3	:	:

Description

Putative RING-H2 finger protein ATL12 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG25140_001]

Coordinates

chrchrUn_random:+:124536367..124536873

Molecular Weight (calculated)

17523.0 Da

IEP (calculated)

4.355

GRAVY (calculated)

0.311

Length

168 amino acids

Sequence
(BLAST)

001: MDDVFYYATG GDCVSGSSPP PPAAPPVPHG TELACIDRPV PEIFSFVLCF LVIASLVNFA FVSPSDDEEE EERRAKKVVT GGLDPAVLAS FPVVTCPEAR
101: GAGEGMVGRE CAVCLTEFGV GDALRVLPPC RHGFHPVCID PCLAGHATCP LCRSDLAAGH VIVNGVEA

Best Arabidopsis Sequence Match ( AT2G20030.1 )
(BLAST)

001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV

Arabidopsis Description

ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.