Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 5
- plastid 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400052223 | |
PGSC0003DMT400056935 | |
PGSC0003DMT400056939 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G27940.1 | PGSC0003DMT400052223 | AT5G40930.1 | 21798944 |
AT2G27940.1 | PGSC0003DMT400056935 | AT5G40930.1 | 21798944 |
AT2G27940.1 | PGSC0003DMT400056939 | AT5G40930.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc11g066510.1.1 | Tomato | nucleus | 91.98 | 72.88 |
Bra011991.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 31.02 | 40.85 |
CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 30.48 | 40.14 |
AT2G27940.1 | Thale cress | plasma membrane | 35.83 | 28.27 |
KRH53320 | Soybean | mitochondrion | 13.9 | 24.53 |
GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 19.25 | 21.43 |
GSMUA_Achr4P12270_001 | Banana | plastid | 19.25 | 20.81 |
Os10t0574400-01 | Rice | mitochondrion, plasma membrane, plastid | 20.86 | 19.6 |
TraesCS1A01G192600.1 | Wheat | plastid | 21.93 | 19.43 |
KRH14610 | Soybean | endoplasmic reticulum, nucleus, plastid | 16.58 | 17.61 |
Zm00001d030038_P001 | Maize | plastid | 21.39 | 17.24 |
OQU92087 | Sorghum | golgi, peroxisome, plastid | 22.46 | 16.87 |
PGSC0003DMT400046825 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 34.76 | 16.33 |
KRH31340 | Soybean | endoplasmic reticulum, plasma membrane | 18.72 | 15.56 |
PGSC0003DMT400005472 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 32.09 | 15.35 |
PGSC0003DMT400070587 | Potato | plastid | 27.27 | 14.83 |
PGSC0003DMT400073575 | Potato | extracellular, plasma membrane | 33.69 | 14.55 |
PGSC0003DMT400045807 | Potato | plasma membrane | 28.34 | 14.02 |
PGSC0003DMT400000810 | Potato | plasma membrane | 23.53 | 11.89 |
PGSC0003DMT400078951 | Potato | plasma membrane | 24.06 | 10.66 |
Protein Annotations
MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 | GO:GO:0046872 |
InterPro:IPR001841 | InterPro:IPR011016 | InterPro:IPR013083 | UniProt:M0ZI40 | PFAM:PF13639 | EnsemblPlantsGene:PGSC0003DMG400000460 |
PGSC:PGSC0003DMG400000460 | EnsemblPlants:PGSC0003DMT400001221 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF274 | SMART:SM00184 |
SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0002965D1C | InterPro:Znf_RING | InterPro:Znf_RING-CH |
InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RING-H2 finger protein ATL57 [Source:PGSC_GENE;Acc:PGSC0003DMG400000460]
Coordinates
chr11:-:39328075..39329858
Molecular Weight (calculated)
20885.8 Da
IEP (calculated)
7.356
GRAVY (calculated)
-0.087
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MALTILVLLT ALFFMGFFSI YIRHFAGDTT TSTGYDDDRR RRNPSLSSSS SSAHRSCRKG LDPSTVQSLP LISYGGAAKH LIEDCPICLS EFEVSELVRL
101: IPYCRHVFHQ QCLDTWLSSH VTCPLCRSTQ FFKNVDEVCL DVVDVGNENG VSERSTVQEC DTCRCIRRSC SSSNLGSRVT LHRSASF
101: IPYCRHVFHQ QCLDTWLSSH VTCPLCRSTQ FFKNVDEVCL DVVDVGNENG VSERSTVQEC DTCRCIRRSC SSSNLGSRVT LHRSASF
001: METKHLRKLL QLYQACGGEQ ELTKTVQNVT SSPLTPTPPP QPPSALDSTM ALTIFILLVA LFFMGFFSVY FRHFADSSSS TVDISSMPRT RSSRMSPRRL
101: STSVVVSRPY SFRRGLDSQA VRSLPVYRYT KAAKQRNEDC VICLSDFEEG ETVKVIPHCG HVFHVDCVDT WLSSYVTCPL CRSNQLFSDK DLGMQEPPDQ
201: DSAEEHDTCD GVDTCVRRCS SCSSLGQRTG LERSLSL
101: STSVVVSRPY SFRRGLDSQA VRSLPVYRYT KAAKQRNEDC VICLSDFEEG ETVKVIPHCG HVFHVDCVDT WLSSYVTCPL CRSNQLFSDK DLGMQEPPDQ
201: DSAEEHDTCD GVDTCVRRCS SCSSLGQRTG LERSLSL
Arabidopsis Description
ATL57RING-H2 finger protein ATL57 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.