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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 7
  • plasma membrane 5
  • golgi 5
  • plastid 1
  • nucleus 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g066510.1.1 Tomato nucleus 91.98 72.88
Bra011991.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 31.02 40.85
CDY04519 Canola endoplasmic reticulum, extracellular, plasma membrane 30.48 40.14
AT2G27940.1 Thale cress plasma membrane 35.83 28.27
KRH53320 Soybean mitochondrion 13.9 24.53
GSMUA_AchrUn_... Banana cytosol, nucleus, plasma membrane 19.25 21.43
GSMUA_Achr4P12270_001 Banana plastid 19.25 20.81
Os10t0574400-01 Rice mitochondrion, plasma membrane, plastid 20.86 19.6
TraesCS1A01G192600.1 Wheat plastid 21.93 19.43
KRH14610 Soybean endoplasmic reticulum, nucleus, plastid 16.58 17.61
Zm00001d030038_P001 Maize plastid 21.39 17.24
OQU92087 Sorghum golgi, peroxisome, plastid 22.46 16.87
PGSC0003DMT400046825 Potato endoplasmic reticulum, plasma membrane, vacuole 34.76 16.33
KRH31340 Soybean endoplasmic reticulum, plasma membrane 18.72 15.56
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 32.09 15.35
PGSC0003DMT400070587 Potato plastid 27.27 14.83
PGSC0003DMT400073575 Potato extracellular, plasma membrane 33.69 14.55
PGSC0003DMT400045807 Potato plasma membrane 28.34 14.02
PGSC0003DMT400000810 Potato plasma membrane 23.53 11.89
PGSC0003DMT400078951 Potato plasma membrane 24.06 10.66
Protein Annotations
MapMan:19.2.2.1.5.3.3Gene3D:3.30.40.10GO:GO:0003674GO:GO:0005488GO:GO:0008270GO:GO:0046872
InterPro:IPR001841InterPro:IPR011016InterPro:IPR013083UniProt:M0ZI40PFAM:PF13639EnsemblPlantsGene:PGSC0003DMG400000460
PGSC:PGSC0003DMG400000460EnsemblPlants:PGSC0003DMT400001221PFscan:PS50089PANTHER:PTHR14155PANTHER:PTHR14155:SF274SMART:SM00184
SMART:SM00744SUPFAM:SSF57850TMHMM:TMhelixUniParc:UPI0002965D1CInterPro:Znf_RINGInterPro:Znf_RING-CH
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
RING-H2 finger protein ATL57 [Source:PGSC_GENE;Acc:PGSC0003DMG400000460]
Coordinates
chr11:-:39328075..39329858
Molecular Weight (calculated)
20885.8 Da
IEP (calculated)
7.356
GRAVY (calculated)
-0.087
Length
187 amino acids
Sequence
(BLAST)
001: MALTILVLLT ALFFMGFFSI YIRHFAGDTT TSTGYDDDRR RRNPSLSSSS SSAHRSCRKG LDPSTVQSLP LISYGGAAKH LIEDCPICLS EFEVSELVRL
101: IPYCRHVFHQ QCLDTWLSSH VTCPLCRSTQ FFKNVDEVCL DVVDVGNENG VSERSTVQEC DTCRCIRRSC SSSNLGSRVT LHRSASF
Best Arabidopsis Sequence Match ( AT2G27940.1 )
(BLAST)
001: METKHLRKLL QLYQACGGEQ ELTKTVQNVT SSPLTPTPPP QPPSALDSTM ALTIFILLVA LFFMGFFSVY FRHFADSSSS TVDISSMPRT RSSRMSPRRL
101: STSVVVSRPY SFRRGLDSQA VRSLPVYRYT KAAKQRNEDC VICLSDFEEG ETVKVIPHCG HVFHVDCVDT WLSSYVTCPL CRSNQLFSDK DLGMQEPPDQ
201: DSAEEHDTCD GVDTCVRRCS SCSSLGQRTG LERSLSL
Arabidopsis Description
ATL57RING-H2 finger protein ATL57 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.