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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 4
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400046825 Potato endoplasmic reticulum, plasma membrane, vacuole 59.82 65.08
KRG92822 Soybean endoplasmic reticulum, plasma membrane, vacuole 36.95 47.62
KRH33975 Soybean golgi, plasma membrane, vacuole 38.57 46.52
KRG96857 Soybean vacuole 39.72 45.87
KRH68588 Soybean plasma membrane 38.34 45.36
AT5G27420.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 36.49 42.93
VIT_14s0128g00120.t01 Wine grape plasma membrane, plastid, vacuole 39.95 41.19
Bra036631.1-P Field mustard plasma membrane 33.26 41.14
GSMUA_Achr7P12810_001 Banana endoplasmic reticulum, plasma membrane, vacuole 28.87 40.98
GSMUA_Achr5P17910_001 Banana golgi, plasma membrane, vacuole 32.33 40.58
GSMUA_AchrUn_... Banana golgi, plasma membrane 31.64 38.81
Bra040642.1-P Field mustard plasma membrane 34.41 38.6
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 27.02 38.49
TraesCS5D01G254900.1 Wheat golgi, plasma membrane 34.41 38.01
Bra020591.1-P Field mustard plasma membrane 33.26 37.8
AT3G05200.1 Thale cress plasma membrane 34.41 37.44
Bra009962.1-P Field mustard mitochondrion, plastid 24.48 37.06
GSMUA_Achr3P20400_001 Banana mitochondrion 29.33 36.92
TraesCS5A01G248100.1 Wheat plasma membrane 33.72 36.78
TraesCS5B01G245800.1 Wheat plasma membrane 33.49 36.62
HORVU5Hr1G069980.1 Barley plasma membrane 32.1 36.2
Os09t0468300-00 Rice golgi, plasma membrane 32.33 36.18
GSMUA_Achr9P15010_001 Banana endoplasmic reticulum, plasma membrane 29.79 36.03
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 31.87 35.75
GSMUA_Achr6P30500_001 Banana plasma membrane 24.02 35.62
Zm00001d005936_P001 Maize plasma membrane 32.1 35.37
TraesCS3B01G549900.1 Wheat vacuole 25.17 34.6
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 30.95 34.27
GSMUA_Achr10P... Banana plasma membrane 30.48 34.02
EER99041 Sorghum endoplasmic reticulum, plasma membrane 32.33 33.98
Zm00001d020789_P001 Maize plasma membrane 31.18 33.92
PGSC0003DMT400001221 Potato vacuole 14.55 33.69
TraesCS3D01G495500.1 Wheat vacuole 30.02 33.68
GSMUA_AchrUn_... Banana plastid 27.94 33.61
GSMUA_Achr3P06680_001 Banana mitochondrion, plastid 30.02 33.51
TraesCS6D01G113000.1 Wheat golgi 29.1 31.42
PGSC0003DMT400045807 Potato plasma membrane 27.25 31.22
TraesCS6B01G151000.1 Wheat extracellular, golgi, plasma membrane 29.1 31.19
TraesCS6A01G122800.1 Wheat endoplasmic reticulum, golgi, mitochondrion 29.1 31.03
HORVU4Hr1G080840.1 Barley cytosol 16.86 30.8
EES18560 Sorghum golgi, plasma membrane 27.94 30.79
Zm00001d031261_P001 Maize golgi 26.56 30.5
HORVU6Hr1G022590.1 Barley golgi, mitochondrion 28.41 30.45
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 24.25 30.17
HORVU4Hr1G022090.1 Barley endoplasmic reticulum, golgi, plasma membrane 14.55 29.72
HORVU4Hr1G078260.1 Barley plasma membrane 24.25 29.41
TraesCS4D01G302600.1 Wheat plasma membrane 24.02 29.3
TraesCS4A01G404600.1 Wheat plasma membrane 24.02 29.3
Os08t0484200-01 Rice golgi 27.48 28.81
TraesCS4B01G304400.1 Wheat plasma membrane 23.33 28.45
Zm00001d052189_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 27.25 28.43
Zm00001d018122_P001 Maize vacuole 27.25 28.16
TraesCS6B01G346000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 25.64 27.61
Zm00001d037192_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 26.79 27.55
EER92732 Sorghum golgi 23.09 27.17
Os06t0218300-01 Rice endoplasmic reticulum, extracellular, golgi 27.48 26.92
Os03t0188200-01 Rice golgi 21.94 26.91
OQU85775 Sorghum golgi, plasma membrane, vacuole 26.1 26.71
TraesCS6D01G294800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 24.94 26.67
TraesCS6A01G315600.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 24.94 26.67
TraesCS4A01G104900.1 Wheat mitochondrion 23.79 26.61
TraesCS7B01G081700.1 Wheat golgi 25.4 26.57
TraesCS7D01G178000.1 Wheat golgi 24.94 26.47
Os02t0759400-01 Rice endoplasmic reticulum, golgi, mitochondrion, plastid 26.56 26.32
TraesCS7A01G176700.1 Wheat golgi 25.17 26.27
HORVU6Hr1G077610.1 Barley plasma membrane 24.48 26.11
KXG39223 Sorghum golgi, plasma membrane, plastid, vacuole 23.33 26.1
Zm00001d048230_P001 Maize golgi 22.86 26.05
HORVU4Hr1G057610.1 Barley plastid 24.71 25.97
Zm00001d027983_P001 Maize plasma membrane, plastid 21.48 25.69
TraesCS4D01G200100.1 Wheat plastid 24.48 25.6
Zm00001d029395_P001 Maize plasma membrane, plastid 21.25 24.02
TraesCS4B01G199100.1 Wheat plastid 24.48 23.71
Os03t0391100-00 Rice endoplasmic reticulum, golgi 23.09 22.99
OQU76061 Sorghum cytosol, peroxisome, plasma membrane 27.71 22.02
HORVU7Hr1G036380.2 Barley endoplasmic reticulum 21.02 21.88
PGSC0003DMT400070587 Potato plastid 17.09 21.51
PGSC0003DMT400000810 Potato plasma membrane 15.94 18.65
PGSC0003DMT400078951 Potato plasma membrane 17.55 18.01
Protein Annotations
EntrezGene:102585676MapMan:19.2.2.1.5.3.3Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:IPR001841InterPro:IPR013083UniProt:M1CS97PFAM:PF13639EnsemblPlantsGene:PGSC0003DMG400028579PGSC:PGSC0003DMG400028579
EnsemblPlants:PGSC0003DMT400073575PFscan:PS50089PANTHER:PTHR14155PANTHER:PTHR14155:SF414SMART:SM00184SUPFAM:SSF57850
SignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI0002948D75RefSeq:XP_006361868.1InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHD
SEG:seg:::::
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028579]
Coordinates
chr1:+:76389028..76390802
Molecular Weight (calculated)
47965.0 Da
IEP (calculated)
8.323
GRAVY (calculated)
-0.505
Length
433 amino acids
Sequence
(BLAST)
001: MGNSMKQESP VLSYLLFVFL FTCSSLIDKS GAQPPTTGNE FQYARLSPPL AIIIIVLIAA LFFMAAFSIY IRHCTQPSGM SGSVRRALSM RRRAAVARGL
101: DATVIETFPT FTYAEVKDHQ IGKGALECAV CLNEFEDDET LRLIPKCDHV FHPECIDAWL ESHDTCPVCR ADLNPQPDEP PVQVPQLIPD EPGTEQQQQN
201: DEVSIRIASD DEQSEQVQQQ QQEEGSVKST VKRNLSFNVP NRVPKQEEGG SIKSGVKRNL SFNVPIQPPR SISMRPRIFS KFRSHSTGHS LVLPGENLDR
301: YTLRLPEGVR KEVMNRALLN RAKSFGGTLP RDTSSRKGYR TGTGDGSNRG SRSNKRMEWS EPEPKSDRWI FTMAPPFFSR GSSMKSPRVG AEAGEGSTSG
401: SLRTAVKLPS FKCLEPKGDE ASLMSTDSAR PPV
Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.