Factsheet for GSMUA_Achr5P17910_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P30500_001	Banana	plasma membrane	51.59	60.96
GSMUA_Achr7P12810_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	50.72	57.38
GSMUA_Achr10P...	Banana	plasma membrane	61.74	54.9
GSMUA_Achr8P09280_001	Banana	cytosol	7.54	54.17
GSMUA_Achr3P20400_001	Banana	mitochondrion	51.59	51.74
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	52.75	51.56
GSMUA_Achr3P06680_001	Banana	mitochondrion, plastid	46.67	41.49
GSMUA_Achr9P15010_001	Banana	endoplasmic reticulum, plasma membrane	42.61	41.06
KRG92822	Soybean	endoplasmic reticulum, plasma membrane, vacuole	36.52	37.5
AT4G09100.1	Thale cress	extracellular	14.2	37.12
KRH33975	Soybean	golgi, plasma membrane, vacuole	38.55	37.05
CDY53236	Canola	plasma membrane	36.81	36.6
AT5G27420.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	38.84	36.41
Bra036631.1-P	Field mustard	plasma membrane	36.81	36.29
CDY19719	Canola	endoplasmic reticulum, plasma membrane, vacuole	36.52	36.0
CDX99986	Canola	plasma membrane	35.94	35.53
Bra009960.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	30.72	34.87
CDX86162	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.72	34.87
GSMUA_AchrUn_...	Banana	plastid	35.94	34.44
Solyc03g112340.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	39.42	34.17
KRH68588	Soybean	plasma membrane	36.23	34.15
KRG96857	Soybean	vacuole	37.1	34.13
KRH62285	Soybean	endoplasmic reticulum, plasma membrane, vacuole	33.62	34.12
Bra040642.1-P	Field mustard	plasma membrane	37.97	33.94
PGSC0003DMT400046825	Potato	endoplasmic reticulum, plasma membrane, vacuole	39.13	33.92
KRH52998	Soybean	endoplasmic reticulum, extracellular, plasma membrane	32.75	33.83
AT3G05200.1	Thale cress	plasma membrane	38.84	33.67
CDX86163	Canola	plasma membrane	29.28	33.67
CDX80653	Canola	plasma membrane	29.57	33.66
CDY18787	Canola	plasma membrane	37.68	33.59
Bra009962.1-P	Field mustard	mitochondrion, plastid	27.54	33.22
CDY05577	Canola	plasma membrane	36.52	32.98
CDY25038	Canola	plasma membrane	35.07	32.7
CDX75097	Canola	extracellular	13.04	32.61
CDX82175	Canola	extracellular	22.03	32.48
PGSC0003DMT400073575	Potato	extracellular, plasma membrane	40.58	32.33
Bra020591.1-P	Field mustard	plasma membrane	35.65	32.28
VIT_14s0128g00120.t01	Wine grape	plasma membrane, plastid, vacuole	39.13	32.14
Bra010641.1-P	Field mustard	extracellular, golgi	28.41	31.82
CDX90377	Canola	extracellular, golgi	28.41	31.82
CDY39477	Canola	extracellular	28.41	31.61
Bra039454.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	35.07	31.35
Bra038386.1-P	Field mustard	extracellular	12.46	31.16
CDY48058	Canola	extracellular	12.46	31.16
VIT_18s0001g06670.t01	Wine grape	extracellular, plasma membrane, vacuole	35.94	31.16
AT1G35330.1	Thale cress	endoplasmic reticulum	29.28	30.79
CDY31657	Canola	extracellular, plasma membrane, plastid	32.46	30.43
KRH72413	Soybean	cytosol, golgi, vacuole	32.75	30.21
CDX84269	Canola	endoplasmic reticulum, plasma membrane, plastid	32.17	30.16
AT4G09120.1	Thale cress	plasma membrane	29.86	29.86
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	14.49	29.76
Bra005374.1-P	Field mustard	plasma membrane, plastid, vacuole	31.59	29.62
AT4G40070.1	Thale cress	extracellular, golgi, mitochondrion, plastid	27.54	29.41
AT2G35000.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	32.17	29.37
CDX84270	Canola	cytosol, plastid, vacuole	26.38	29.07
KRH16796	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	31.88	29.02
PGSC0003DMT400005472	Potato	endoplasmic reticulum, plasma membrane, vacuole	32.46	28.64
Bra000673.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	28.12	28.61
CDY12022	Canola	plasma membrane	29.28	28.61
Solyc04g074820.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	32.46	28.5
CDY62007	Canola	golgi, plasma membrane	31.01	28.46
CDX82176	Canola	extracellular	29.86	28.22
Bra012330.1-P	Field mustard	golgi, plasma membrane	28.12	28.2
Bra040855.1-P	Field mustard	golgi, plasma membrane	30.72	28.19
CDY21367	Canola	golgi, plasma membrane	30.72	28.19
Bra005375.1-P	Field mustard	cytosol, nucleus, plastid	25.51	28.11
CDY31656	Canola	cytosol, endoplasmic reticulum, plastid	25.51	28.11
AT2G34990.2	Thale cress	plasma membrane	26.38	28.09
Bra028075.1-P	Field mustard	plasma membrane	28.7	28.05
CDY03116	Canola	plasma membrane	28.7	28.05
CDX90713	Canola	extracellular, golgi, plasma membrane	27.54	28.02
CDY70284	Canola	plasma membrane	31.59	28.02
GSMUA_Achr4P12270_001	Banana	plastid	13.91	27.75
Bra003887.1-P	Field mustard	endoplasmic reticulum, plasma membrane	28.7	27.58
CDY05049	Canola	plasma membrane	23.19	27.4
Bra008016.1-P	Field mustard	plasma membrane	31.88	27.3
CDY03651	Canola	plasma membrane	31.88	27.3
AT1G72200.1	Thale cress	plasma membrane	31.88	27.23
AT4G09130.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	28.12	27.17
AT4G09110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	23.77	27.15
CDX82179	Canola	plasma membrane	27.54	27.07
AT1G22500.1	Thale cress	plasma membrane	29.57	26.77
Solyc12g087860.1.1	Tomato	vacuole	28.7	26.54
Bra001139.1-P	Field mustard	extracellular, golgi, plasma membrane	26.67	26.44
Bra008015.1-P	Field mustard	plasma membrane	29.57	25.76
CDY03652	Canola	plasma membrane	29.57	25.76
PGSC0003DMT400045807	Potato	plasma membrane	28.12	25.66
KRH16794	Soybean	plasma membrane	28.99	25.51
KRH72412	Soybean	nucleus, plasma membrane, plastid	28.12	25.13
CDY70750	Canola	extracellular, mitochondrion, nucleus	21.45	24.42
GSMUA_Achr1P17360_001	Banana	nucleus, plasma membrane, plastid	17.68	24.21
CDY05145	Canola	plasma membrane	20.0	23.23
GSMUA_Achr6P22700_001	Banana	plasma membrane	15.94	23.11
CDY27787	Canola	extracellular, plasma membrane, vacuole	20.0	22.92
GSMUA_Achr4P08120_001	Banana	plasma membrane	22.61	21.73
GSMUA_Achr9P00230_001	Banana	vacuole	22.32	20.92
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	22.03	20.71
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	21.45	20.11
CDY12527	Canola	extracellular, plasma membrane, vacuole	13.33	19.33
CDY25739	Canola	endoplasmic reticulum, extracellular, plasma membrane	13.33	19.33
GSMUA_Achr6P26720_001	Banana	plasma membrane	19.42	19.09
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	20.29	18.23
CDY50446	Canola	mitochondrion	11.59	16.74

Protein Annotations

EnsemblPlants:GSMUA_Achr5P17910_001	EnsemblPlants:GSMUA_Achr5T17910_001	EnsemblPlantsGene:GSMUA_Achr5G17910_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF414	PFAM:PF13639	PFscan:PS50089	SEG:seg	SignalP:SignalP-TM	SMART:SM00184
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000294E73C	UniProt:M0SZH0	MapMan:19.2.2.1.5.3.3	:

Description

Putative E3 ubiquitin-protein ligase ATL6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G17910_001]

Coordinates

chr5:+:19097009..19098358

Molecular Weight (calculated)

37685.1 Da

IEP (calculated)

9.230

GRAVY (calculated)

-0.285

Length

345 amino acids

Sequence
(BLAST)

001: MDTKRSGRPI DGLPILALLY LLPLLLLTPR CARAQPSPTF GGSNDNNYGN LNPTLAIVIV VIISTFFVLV FFSLYVRNCT GQDDFGGSIW RRAAEARSVR
101: PQQRGLSPEV LETFPTLMYA DVKGLKVGKG SLECAVCLSE FDDDEELRLL PRCSHVFHTD CIGAWLASHV TCPVCRANLA EPTAQREKAI LARIGSRTRE
201: ARSRSGRRPP KFPRSHSTGH SVVRPEEDLD RYTLRLPEHI QKEIFAARKL DRSASCVTFP TSGGECSRHG SGGCGAEGSS RGGWSAQLEK LDRWSSVLLR
301: TLSVKVPTWA GRRRGEGEGS VRKEEGEGST TGKLAAGIPS VVPNV

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.