Factsheet for GSMUA_Achr9P13810_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, vacuole

Predictor Summary:

plastid 2
vacuole 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	vacuole
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	73.1	70.05
GSMUA_Achr8P09280_001	Banana	cytosol	5.98	45.83
TraesCSU01G093700.1	Wheat	plastid	47.55	43.97
TraesCS7D01G420000.1	Wheat	plastid	47.55	43.64
Zm00001d014612_P001	Maize	peroxisome	47.01	43.58
TraesCS7B01G327800.1	Wheat	plastid	47.55	43.53
HORVU7Hr1G098470.1	Barley	plastid	47.28	43.5
EER90301	Sorghum	endoplasmic reticulum, golgi, vacuole	47.28	43.28
Os06t0695900-01	Rice	endoplasmic reticulum, vacuole	46.74	43.11
KRH62179	Soybean	plasma membrane	36.68	40.18
CDX98867	Canola	endoplasmic reticulum, golgi	37.23	38.81
KRH70712	Soybean	endoplasmic reticulum, extracellular, vacuole	21.74	37.56
CDX70126	Canola	plasma membrane	39.95	36.48
Bra009136.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	39.13	35.64
AT5G05810.1	Thale cress	endoplasmic reticulum, golgi	39.13	35.38
VIT_11s0052g00530.t01	Wine grape	plasma membrane	41.85	33.7
Solyc07g007440.1.1	Tomato	plasma membrane, vacuole	38.32	33.57
PGSC0003DMT400078951	Potato	plasma membrane	37.77	32.94
GSMUA_Achr6P26720_001	Banana	plasma membrane	29.35	30.77
GSMUA_Achr9P00230_001	Banana	vacuole	29.08	29.08
GSMUA_Achr4P08120_001	Banana	plasma membrane	27.99	28.69
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	27.99	28.07
GSMUA_Achr6P22700_001	Banana	plasma membrane	17.93	27.73
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plasma membrane	11.41	25.0
GSMUA_Achr7P12810_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	19.57	23.61
GSMUA_Achr4P12270_001	Banana	plastid	10.87	23.12
GSMUA_Achr3P20400_001	Banana	mitochondrion	21.2	22.67
GSMUA_AchrUn_...	Banana	plastid	22.01	22.5
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	21.2	22.1
GSMUA_Achr6P30500_001	Banana	plasma membrane	17.12	21.58
GSMUA_Achr5P17910_001	Banana	golgi, plasma membrane, vacuole	20.11	21.45
GSMUA_Achr1P17360_001	Banana	nucleus, plasma membrane, plastid	14.13	20.63
GSMUA_Achr10P...	Banana	plasma membrane	21.74	20.62
GSMUA_Achr9P15010_001	Banana	endoplasmic reticulum, plasma membrane	18.21	18.72
GSMUA_Achr3P06680_001	Banana	mitochondrion, plastid	19.57	18.56

Protein Annotations

EnsemblPlants:GSMUA_Achr9P13810_001	EnsemblPlants:GSMUA_Achr9T13810_001	EnsemblPlantsGene:GSMUA_Achr9G13810_001	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155
PANTHER:PTHR14155:SF78	PFAM:PF13639	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI000294E4AC	UniProt:M0U039	MapMan:19.2.2.1.5.3.3	:	:

Description

Putative RING-H2 finger protein ATL43 [Source:GMGC_GENE;Acc:GSMUA_Achr9G13810_001]

Coordinates

chr9:-:8951122..8952327

Molecular Weight (calculated)

40376.4 Da

IEP (calculated)

8.089

GRAVY (calculated)

-0.169

Length

368 amino acids

Sequence
(BLAST)

001: MTLHRRQLAL VSHLQPRLLL EAAGDDAGAA PSPWPSARPS SFAVPLRPGI AIIVGVLTII FCLTFLLLLY ARHCKHSTAS YGTGRGATGG PLTSASERRH
101: SGVDHAVVES LPVFRFGSLQ GQKEGLECAV CLSRFEPAEV LRLLPKCRHS FHVECVDTWL DAHSTCPLCR VRVDPEDVLL FPLQEPEPHG GGEKAEPLEI
201: VVHPAEPRRR RSVDCPGCAT AAHAPTVRKD ALLLAEAAED SEAFERRHSH RIVVSDADVR VDRWSDLRPT DMLFLRREMI ITESGRFSAS KAVRALSSPA
301: AVVDEELDAS RCASGIAGVG RVPSYGATGG ARRLAEEERT LRRWLGFSAM RTAVRWLWKR ESGNRLET

Best Arabidopsis Sequence Match ( AT5G05810.1 )
(BLAST)

001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV

Arabidopsis Description

ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.