Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- endoplasmic reticulum 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G420000.1 | Wheat | plastid | 99.5 | 98.75 |
| TraesCS7B01G327800.1 | Wheat | plastid | 99.25 | 98.26 |
| HORVU7Hr1G098470.1 | Barley | plastid | 97.99 | 97.5 |
| Os06t0695900-01 | Rice | endoplasmic reticulum, vacuole | 85.18 | 84.96 |
| Zm00001d014612_P001 | Maize | peroxisome | 80.65 | 80.86 |
| EER90301 | Sorghum | endoplasmic reticulum, golgi, vacuole | 79.4 | 78.61 |
| GSMUA_Achr9P13810_001 | Banana | golgi, mitochondrion, plastid, vacuole | 43.97 | 47.55 |
| GSMUA_Achr3P05190_001 | Banana | endoplasmic reticulum, golgi, plastid | 45.23 | 46.88 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 37.19 | 41.93 |
| KRH62179 | Soybean | plasma membrane | 34.67 | 41.07 |
| CDX70126 | Canola | plasma membrane | 39.7 | 39.21 |
| Bra009136.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 38.69 | 38.12 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 38.19 | 37.35 |
| KRH70712 | Soybean | endoplasmic reticulum, extracellular, vacuole | 19.6 | 36.62 |
| PGSC0003DMT400078951 | Potato | plasma membrane | 37.94 | 35.78 |
| VIT_11s0052g00530.t01 | Wine grape | plasma membrane | 40.95 | 35.67 |
| Solyc07g007440.1.1 | Tomato | plasma membrane, vacuole | 37.44 | 35.48 |
Protein Annotations
| EnsemblPlants:TraesCSU01G093700.1 | EnsemblPlantsGene:TraesCSU01G093700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR007110 | InterPro:IPR013083 |
| InterPro:Ig-like_dom | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF78 | PFAM:PF13639 |
| PFscan:PS50089 | PFscan:PS50835 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16461 |
| TMHMM:TMhelix | MapMan:19.2.2.1.5.3.3 | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:82945776..82946972
Molecular Weight (calculated)
41655.6 Da
IEP (calculated)
9.105
GRAVY (calculated)
-0.214
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSRRLLLS DYDGAIMSPL PSPSTSSAAP FKPGVAVVVG ILTSVFSITF LLLLYAKHCK RSAAESSGPY GSGGGSGGGA AGERRNSGVE RAVVESLPVF
101: RFGALRGQKA GLECAVCLGR FEPTEALRLL PKCRHGFHVE CVDTWLDAHS TCPLCRSRVD PEDVLLLPEP PKPSTTGPPE PPEQKAAAAV ATVKDKSKDA
201: ALAPAPAPSP AWRRIAGRHS TGSVRAPGRV GPTSRRSADL EVGGGDGGAA TVGCFDVAKV RKDRVLMVEP AAAVAEPDPV AFDRRFGHRI LVSTACGCDD
301: ETAPAAKQRW SDLRPADLMF VRSEMLVTET GRYSCSAAVN SGNRGRAEIS GRCLSEIAGV SRLPPIRAGA EARAGSARRW PGSSWWARGS PGVNGPST
101: RFGALRGQKA GLECAVCLGR FEPTEALRLL PKCRHGFHVE CVDTWLDAHS TCPLCRSRVD PEDVLLLPEP PKPSTTGPPE PPEQKAAAAV ATVKDKSKDA
201: ALAPAPAPSP AWRRIAGRHS TGSVRAPGRV GPTSRRSADL EVGGGDGGAA TVGCFDVAKV RKDRVLMVEP AAAVAEPDPV AFDRRFGHRI LVSTACGCDD
301: ETAPAAKQRW SDLRPADLMF VRSEMLVTET GRYSCSAAVN SGNRGRAEIS GRCLSEIAGV SRLPPIRAGA EARAGSARRW PGSSWWARGS PGVNGPST
001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
Arabidopsis Description
ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.