Factsheet for Solyc07g007440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078951	Potato	plasma membrane	84.76	84.36
CDX98867	Canola	endoplasmic reticulum, golgi	38.81	46.18
KRH62179	Soybean	plasma membrane	36.43	45.54
CDX70126	Canola	plasma membrane	41.43	43.18
AT5G05810.1	Thale cress	endoplasmic reticulum, golgi	41.43	42.75
Bra009136.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	40.95	42.57
VIT_11s0052g00530.t01	Wine grape	plasma membrane	44.76	41.14
KRH70712	Soybean	endoplasmic reticulum, extracellular, vacuole	20.0	39.44
Os06t0695900-01	Rice	endoplasmic reticulum, vacuole	37.38	39.35
GSMUA_Achr9P13810_001	Banana	golgi, mitochondrion, plastid, vacuole	33.57	38.32
EER90301	Sorghum	endoplasmic reticulum, golgi, vacuole	36.43	38.06
Zm00001d014612_P001	Maize	peroxisome	35.71	37.78
HORVU7Hr1G098470.1	Barley	plastid	35.95	37.75
GSMUA_Achr3P05190_001	Banana	endoplasmic reticulum, golgi, plastid	34.29	37.5
TraesCSU01G093700.1	Wheat	plastid	35.48	37.44
TraesCS7D01G420000.1	Wheat	plastid	35.71	37.41
TraesCS7B01G327800.1	Wheat	plastid	35.71	37.31
Solyc05g018310.1.1	Tomato	extracellular, plasma membrane, vacuole	26.9	34.88
Solyc12g007320.1.1	Tomato	plasma membrane	26.43	29.13
Solyc11g066510.1.1	Tomato	nucleus	11.19	19.92
Solyc04g074820.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	17.86	19.08
Solyc08g005110.1.1	Tomato	plastid	12.14	18.61
Solyc08g076800.2.1	Tomato	plastid	12.38	18.37
Solyc03g112340.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	17.14	18.09
Solyc12g087860.1.1	Tomato	vacuole	14.76	16.62

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4CBL4	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF78
SMART:SM00184	SUPFAM:SSF57850	SignalP:SignalP-TM	EnsemblPlantsGene:Solyc07g007440.1	EnsemblPlants:Solyc07g007440.1.1	TMHMM:TMhelix
UniParc:UPI000276ADE9	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING-H2 finger protein ATL43 [Source:Projected from Arabidopsis thaliana (AT5G05810) UniProtKB/Swiss-Prot;Acc:Q5EAE9]

Coordinates

chr7:+:2158269..2159531

Molecular Weight (calculated)

46853.5 Da

IEP (calculated)

9.198

GRAVY (calculated)

-0.523

Length

420 amino acids

Sequence
(BLAST)

001: MNIYNVYFLS LSLWLLMITV ILNAQEIAES PSPSPPPYYR SRGSPFRPSI VIVVAILTTI FSIVFMLLLY AKHCKREGEF GMTGGGGGLT NAGSSSFRKN
101: SGIDRTVIES LPVFRFGSLR GQKAEGLECA VCLNKFESTE ILRLLPKCKH AFHIECVDTW LDAHSTCPLC RYQVDPEDIL LISHENERKS DSTACSASPA
201: KEKRMYSSSS GRHSSAGERG TSSSSLQIIV ETPKQETPSF LNKRMSLDSW NFYRKKSKST NSTSLSRKDG MLLSKKKAPA PATEPEVEDR RLEHRIIISG
301: DEPELDTASG SRQRWSDVEA CDRLYLRSEM LLSESRRYSG SRKRTAEMES GRRVINERSV SELTGMSRFK SNNNNNEEER ERKGAVKRWL DWISQSQNKS
401: MSDSGASVGA GATTSSFSAS

Best Arabidopsis Sequence Match ( AT5G05810.1 )
(BLAST)

001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV

Arabidopsis Description

ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.