Factsheet for Solyc08g005110.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
nucleus 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35174	Canola	plasma membrane	41.24	40.21
Bra017535.1-P	Field mustard	nucleus, plasma membrane, plastid	40.88	39.86
AT5G46650.1	Thale cress	plasma membrane	41.97	39.79
CDY03202	Canola	plasma membrane	40.51	39.5
CDY63052	Canola	golgi, mitochondrion, plasma membrane, plastid	41.24	39.37
Bra025008.1-P	Field mustard	plastid	41.24	39.37
CDX77681	Canola	golgi, mitochondrion, plasma membrane, plastid	41.24	39.37
CDY44502	Canola	plasma membrane	41.97	39.12
Bra013268.1-P	Field mustard	plasma membrane	41.97	39.12
CDX78812	Canola	plasma membrane	41.61	38.78
AT4G17920.1	Thale cress	plasma membrane	40.88	38.75
CDY01502	Canola	plasma membrane	40.88	37.71
Solyc08g076800.2.1	Tomato	plastid	35.4	34.28
KRH74402	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	33.21	31.6
KRH75596	Soybean	endoplasmic reticulum, plasma membrane, plastid	34.31	30.52
KRH45424	Soybean	endoplasmic reticulum, plasma membrane	32.48	28.8
Solyc11g066510.1.1	Tomato	nucleus	19.34	22.46
Solyc03g112340.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	29.93	20.6
Solyc04g074820.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	29.2	20.36
Solyc12g087860.1.1	Tomato	vacuole	26.28	19.3
CDX90435	Canola	nucleus	41.24	18.4
Bra012630.1-P	Field mustard	nucleus	41.24	18.26
Solyc05g018310.1.1	Tomato	extracellular, plasma membrane, vacuole	17.88	15.12
Solyc12g007320.1.1	Tomato	plasma membrane	18.25	13.12
Solyc07g007440.1.1	Tomato	plasma membrane, vacuole	18.61	12.14

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4CI03	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF305
SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc08g005110.1	EnsemblPlants:Solyc08g005110.1.1	TMHMM:TMhelix	UniParc:UPI000276B68D
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:73476..74300

Molecular Weight (calculated)

30823.2 Da

IEP (calculated)

7.597

GRAVY (calculated)

-0.022

Length

274 amino acids

Sequence
(BLAST)

001: MLTSFIEKSP SPSPSLLPLS YSAPPLIITF TVFLVLFIIF FTIFFCRCFM QHILDSWYIT VAGYPICPTK NEKGLDPLII QSFPTFIYSS VQDYGEGKFG
101: IECAICLVEF VDNSFIRLLT CNHVFHQECI DYWLKSHKTC PVCRANLDSV QCIKLQSSSS CTQSPMHGTS NDGESSETAC HNDINSGTTG SIELQKTGKK
201: FTRSQSTGHS IIIIRENEDR FTMRLPQHVI NAKNMKGHNT MRSCINFGEM NSKTISGNCR FGEVLKLSTF LDKV

Best Arabidopsis Sequence Match ( AT4G17920.1 )
(BLAST)

001: MSTIIPSPLA PQPPQQHYVT PPLTVILTVI LLVFFFIGFF TLYFCKCFLD TMVQAWRLHH GGDTVSDNPL QQPEAPPVNP GLELRIINSF PTFPYSSVKD
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN

Arabidopsis Description

ATL29RING-H2 finger protein ATL29 [Source:UniProtKB/Swiss-Prot;Acc:O49691]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.