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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • plasma membrane 2
  • nucleus 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY63052 Canola golgi, mitochondrion, plasma membrane, plastid 99.3 99.3
CDX77681 Canola golgi, mitochondrion, plasma membrane, plastid 97.91 97.91
AT5G46650.1 Thale cress plasma membrane 82.23 81.66
Bra017535.1-P Field mustard nucleus, plasma membrane, plastid 79.44 81.14
Bra013268.1-P Field mustard plasma membrane 59.23 57.82
Solyc08g005110.1.1 Tomato plastid 39.37 41.24
KRH74402 Soybean endoplasmic reticulum, nucleus, plasma membrane, plastid 35.54 35.42
KRH75596 Soybean endoplasmic reticulum, plasma membrane, plastid 37.98 35.39
KRH45424 Soybean endoplasmic reticulum, plasma membrane 35.19 32.69
Solyc08g076800.2.1 Tomato plastid 31.01 31.45
Bra038386.1-P Field mustard extracellular 13.94 28.99
Bra012630.1-P Field mustard nucleus 55.4 25.69
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 26.13 24.67
Bra010641.1-P Field mustard extracellular, golgi 26.13 24.35
Bra009962.1-P Field mustard mitochondrion, plastid 22.65 22.73
Bra011991.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 10.8 21.83
Bra040642.1-P Field mustard plasma membrane 29.27 21.76
Bra036631.1-P Field mustard plasma membrane 26.13 21.43
Bra005375.1-P Field mustard cytosol, nucleus, plastid 23.0 21.09
Bra020591.1-P Field mustard plasma membrane 27.18 20.47
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 26.13 20.38
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 23.34 19.76
Bra005343.1-P Field mustard plastid 19.16 19.71
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 26.13 19.43
Bra012330.1-P Field mustard golgi, plasma membrane 22.3 18.6
Bra028075.1-P Field mustard plasma membrane 22.65 18.41
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 22.65 18.11
Bra008016.1-P Field mustard plasma membrane 25.09 17.87
Bra040855.1-P Field mustard golgi, plasma membrane 23.0 17.55
Bra008015.1-P Field mustard plasma membrane 24.04 17.42
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 18.82 15.52
Bra017320.1-P Field mustard extracellular, nucleus, plasma membrane 18.12 15.48
Bra009136.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 21.6 15.35
Bra011068.1-P Field mustard endoplasmic reticulum, plasma membrane 21.25 14.63
Bra024178.1-P Field mustard endoplasmic reticulum, plasma membrane 21.25 14.52
Bra010349.1-P Field mustard endoplasmic reticulum, plasma membrane 20.56 14.05
Protein Annotations
EnsemblPlants:Bra025008.1EnsemblPlants:Bra025008.1-PEnsemblPlantsGene:Bra025008Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155
PANTHER:PTHR14155:SF305PFAM:PF13639PFscan:PS50089SEG:segSMART:SM00184SUPFAM:SSF57850
TMHMM:TMhelixUniParc:UPI000253FB77UniProt:M4E8A2MapMan:19.2.2.1.5.3.3::
Description
AT5G46650 (E=2e-123) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA06:-:24660422..24661285
Molecular Weight (calculated)
32839.0 Da
IEP (calculated)
7.237
GRAVY (calculated)
-0.563
Length
287 amino acids
Sequence
(BLAST)
001: MPITKPLGSN TTLRSQPPQQ YSKPPLFVIL TVILLVVFFI GFCALYFCKC FFHTVSHAWD RRYGNRSPGN QIQSQQENAS QPPVNPGLEP RIIQSFPLFP
101: FSSVKDLRED NQGLECAICL LEFEEEHILL RLLTTCYHVF HQECIDRWLD SNKTCPVCRR NLDPNAPENI KELIIEVIHE NSNGNHEQPS TSNEVSLSRQ
201: SSSSGMTEPL PDKFSRSKTT GHSIVRNKPE EEDRYTLRLP DHVKIKVTRR HNNNQTESCI SFGELMRNRQ GRFGELSGQS LVPESQS
Best Arabidopsis Sequence Match ( AT5G46650.1 )
(BLAST)
001: MPIAKPINQN TTVPYPPQHY SKPPLVIILT VILLVVFFIG FFAIYFCKCF YHTLTEAWNH HYHNGLPENQ IQAQQEPVQP PVNPGLEPHI IQSYPLFPFS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS
Arabidopsis Description
ATL30RING-H2 finger protein ATL30 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.