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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • plastid 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:plasma membrane
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78812 Canola plasma membrane 99.32 99.32
CDY44502 Canola plasma membrane 98.98 98.98
AT4G17920.1 Thale cress plasma membrane 82.31 83.74
Bra025008.1-P Field mustard plastid 57.82 59.23
Bra017535.1-P Field mustard nucleus, plasma membrane, plastid 54.42 56.94
Solyc08g005110.1.1 Tomato plastid 39.12 41.97
Bra012630.1-P Field mustard nucleus 79.93 37.96
KRH74402 Soybean endoplasmic reticulum, nucleus, plasma membrane, plastid 37.07 37.85
KRH75596 Soybean endoplasmic reticulum, plasma membrane, plastid 38.44 36.69
Solyc08g076800.2.1 Tomato plastid 33.33 34.63
KRH45424 Soybean endoplasmic reticulum, plasma membrane 34.69 33.01
Bra038386.1-P Field mustard extracellular 13.95 29.71
Bra009960.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 26.53 25.66
Bra010641.1-P Field mustard extracellular, golgi 26.87 25.65
Bra009962.1-P Field mustard mitochondrion, plastid 22.79 23.43
Bra005375.1-P Field mustard cytosol, nucleus, plastid 24.15 22.68
Bra036631.1-P Field mustard plasma membrane 26.87 22.57
Bra040642.1-P Field mustard plasma membrane 28.91 22.02
Bra011991.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 10.54 21.83
Bra020591.1-P Field mustard plasma membrane 26.87 20.73
Bra039454.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 27.21 20.73
Bra005343.1-P Field mustard plastid 19.05 20.07
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 24.49 20.06
Bra005374.1-P Field mustard plasma membrane, plastid, vacuole 24.83 19.84
Bra000673.1-P Field mustard endoplasmic reticulum, golgi, plasma membrane 22.79 19.76
Bra012330.1-P Field mustard golgi, plasma membrane 22.11 18.9
Bra028075.1-P Field mustard plasma membrane 22.45 18.7
Bra040855.1-P Field mustard golgi, plasma membrane 23.47 18.35
Bra008016.1-P Field mustard plasma membrane 24.83 18.11
Bra008015.1-P Field mustard plasma membrane 23.81 17.68
Bra017320.1-P Field mustard extracellular, nucleus, plasma membrane 17.69 15.48
Bra001139.1-P Field mustard extracellular, golgi, plasma membrane 17.35 14.66
Bra009136.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 19.05 13.86
Bra010349.1-P Field mustard endoplasmic reticulum, plasma membrane 19.39 13.57
Bra011068.1-P Field mustard endoplasmic reticulum, plasma membrane 19.05 13.43
Bra024178.1-P Field mustard endoplasmic reticulum, plasma membrane 19.05 13.33
Protein Annotations
EnsemblPlants:Bra013268.1EnsemblPlants:Bra013268.1-PEnsemblPlantsGene:Bra013268Gene3D:3.30.40.10GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155
PANTHER:PTHR14155:SF305PFAM:PF13639PFscan:PS50089SEG:segSMART:SM00184SUPFAM:SSF57850
TMHMM:TMhelixUniParc:UPI0002545EA6UniProt:M4D9V8MapMan:19.2.2.1.5.3.3::
Description
AT4G17920 (E=9e-122) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA01:-:4632272..4633156
Molecular Weight (calculated)
33703.8 Da
IEP (calculated)
5.344
GRAVY (calculated)
-0.475
Length
294 amino acids
Sequence
(BLAST)
001: MSTYPSSLPP HSPSENYVTP PLTVILTVIL LVFFFIGFFT LYFCKCFLDA MMQAWRLRHG GEAEATENPI QPPEAPTVNP GLELRIINSF PTFPYSSVKD
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHKTCPV CRHDLDPPPP ENTTITLPNV DEMIIDVIQE NSDDDQHHQI TTQIDTWPSS
201: GQNSCLNSER SRKEQTLPDK FSRSHSTGHS IVRNKPEEED RYTLRLPEHV KIKVTRGHGQ TESCVTFGEI IRNKCDHRRF GEVSNQTVVT QSEN
Best Arabidopsis Sequence Match ( AT4G17920.1 )
(BLAST)
001: MSTIIPSPLA PQPPQQHYVT PPLTVILTVI LLVFFFIGFF TLYFCKCFLD TMVQAWRLHH GGDTVSDNPL QQPEAPPVNP GLELRIINSF PTFPYSSVKD
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN
Arabidopsis Description
ATL29RING-H2 finger protein ATL29 [Source:UniProtKB/Swiss-Prot;Acc:O49691]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.