Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44502 | Canola | plasma membrane | 83.74 | 82.31 |
| Bra013268.1-P | Field mustard | plasma membrane | 83.74 | 82.31 |
| CDX78812 | Canola | plasma membrane | 83.39 | 81.97 |
| CDY01502 | Canola | plasma membrane | 81.31 | 79.12 |
| AT5G46650.1 | Thale cress | plasma membrane | 60.55 | 60.55 |
| Solyc08g005110.1.1 | Tomato | plastid | 38.75 | 40.88 |
| KRH74402 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 38.41 | 38.54 |
| CDX90435 | Canola | nucleus | 80.97 | 38.11 |
| Bra012630.1-P | Field mustard | nucleus | 80.97 | 37.8 |
| KRH75596 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 39.45 | 37.01 |
| Solyc08g076800.2.1 | Tomato | plastid | 34.26 | 34.98 |
| KRH45424 | Soybean | endoplasmic reticulum, plasma membrane | 36.33 | 33.98 |
| AT4G09100.1 | Thale cress | extracellular | 14.88 | 32.58 |
| AT2G34990.2 | Thale cress | plasma membrane | 26.64 | 23.77 |
| AT4G40070.1 | Thale cress | extracellular, golgi, mitochondrion, plastid | 24.91 | 22.29 |
| AT5G27420.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 28.37 | 22.28 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 19.38 | 22.05 |
| AT1G35330.1 | Thale cress | endoplasmic reticulum | 24.91 | 21.95 |
| AT3G05200.1 | Thale cress | plasma membrane | 29.41 | 21.36 |
| AT2G35000.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 26.3 | 20.11 |
| AT4G09120.1 | Thale cress | plasma membrane | 23.88 | 20.0 |
| AT1G72200.1 | Thale cress | plasma membrane | 25.61 | 18.32 |
| AT4G09130.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 22.49 | 18.21 |
| AT1G22500.1 | Thale cress | plasma membrane | 23.18 | 17.59 |
| AT4G09110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 18.34 | 17.55 |
| AT2G27940.1 | Thale cress | plasma membrane | 12.46 | 15.19 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 20.42 | 15.13 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 19.38 | 13.76 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 19.38 | 12.96 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | EntrezGene:827517 | UniProt:A0A178V3B7 | ProteinID:AEE83968.1 | ArrayExpress:AT4G17920 |
| EnsemblPlantsGene:AT4G17920 | RefSeq:AT4G17920 | TAIR:AT4G17920 | RefSeq:AT4G17920-TAIR-G | EnsemblPlants:AT4G17920.1 | TAIR:AT4G17920.1 |
| ProteinID:CAA17135.1 | ProteinID:CAB78794.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0046872 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_193526.1 | UniProt:O49691 | ProteinID:OAO99391.1 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF305 | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI000009FDAF | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
ATL29RING-H2 finger protein ATL29 [Source:UniProtKB/Swiss-Prot;Acc:O49691]
Coordinates
chr4:-:9963051..9964090
Molecular Weight (calculated)
33243.3 Da
IEP (calculated)
5.851
GRAVY (calculated)
-0.537
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTIIPSPLA PQPPQQHYVT PPLTVILTVI LLVFFFIGFF TLYFCKCFLD TMVQAWRLHH GGDTVSDNPL QQPEAPPVNP GLELRIINSF PTFPYSSVKD
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.