Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012630.1-P | Field mustard | nucleus | 99.51 | 98.71 |
| CDY01502 | Canola | plasma membrane | 46.74 | 96.63 |
| AT4G17920.1 | Thale cress | plasma membrane | 38.11 | 80.97 |
| CDY44502 | Canola | plasma membrane | 38.44 | 80.27 |
| CDX78812 | Canola | plasma membrane | 38.11 | 79.59 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 26.22 | 56.1 |
| CDY03202 | Canola | plasma membrane | 25.41 | 55.52 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 25.73 | 55.05 |
| CDY35174 | Canola | plasma membrane | 24.92 | 54.45 |
| Solyc08g005110.1.1 | Tomato | plastid | 18.4 | 41.24 |
| KRH74402 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 18.08 | 38.54 |
| KRH75596 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 17.92 | 35.71 |
| KRH45424 | Soybean | endoplasmic reticulum, plasma membrane | 17.26 | 34.3 |
| CDY31686 | Canola | nucleus | 5.86 | 34.29 |
| Solyc08g076800.2.1 | Tomato | plastid | 15.64 | 33.92 |
| CDY48058 | Canola | extracellular | 6.84 | 30.43 |
| CDX75097 | Canola | extracellular | 6.68 | 29.71 |
| CDY62419 | Canola | cytosol | 6.03 | 24.67 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 12.05 | 24.34 |
| CDX90377 | Canola | extracellular, golgi | 11.89 | 23.7 |
| CDY53236 | Canola | plasma membrane | 13.36 | 23.63 |
| CDY39477 | Canola | extracellular | 11.89 | 23.55 |
| CDX80653 | Canola | plasma membrane | 11.4 | 23.1 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 11.56 | 22.68 |
| CDX82175 | Canola | extracellular | 8.63 | 22.65 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 11.4 | 22.36 |
| CDX99986 | Canola | plasma membrane | 12.54 | 22.06 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 12.38 | 21.71 |
| CDY18787 | Canola | plasma membrane | 13.52 | 21.45 |
| CDX86163 | Canola | plasma membrane | 10.42 | 21.33 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 4.89 | 21.13 |
| CDY25038 | Canola | plasma membrane | 12.7 | 21.08 |
| CDY05577 | Canola | plasma membrane | 12.7 | 20.42 |
| CDY05713 | Canola | extracellular | 4.89 | 20.41 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 10.59 | 19.17 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 11.4 | 19.02 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 11.4 | 19.02 |
| CDX82179 | Canola | plasma membrane | 10.59 | 18.52 |
| CDY05049 | Canola | plasma membrane | 8.79 | 18.49 |
| CDX82176 | Canola | extracellular | 10.91 | 18.36 |
| CDY12022 | Canola | plasma membrane | 10.42 | 18.13 |
| CDY70284 | Canola | plasma membrane | 11.4 | 17.99 |
| CDY03116 | Canola | plasma membrane | 10.26 | 17.85 |
| CDY62007 | Canola | golgi, plasma membrane | 10.91 | 17.82 |
| CDY21367 | Canola | golgi, plasma membrane | 10.91 | 17.82 |
| CDY03651 | Canola | plasma membrane | 11.4 | 17.37 |
| CDY03652 | Canola | plasma membrane | 11.07 | 17.17 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 8.47 | 14.73 |
| CDY13888 | Canola | plasma membrane | 8.79 | 14.59 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 8.79 | 14.1 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 8.47 | 14.02 |
| CDX70126 | Canola | plasma membrane | 9.12 | 13.9 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 8.63 | 12.99 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 8.63 | 12.96 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 8.63 | 12.71 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 8.63 | 12.71 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 8.63 | 12.62 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 8.47 | 12.53 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 6.03 | 12.21 |
| CDY05145 | Canola | plasma membrane | 5.86 | 12.12 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 4.56 | 11.76 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 5.7 | 11.63 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 4.4 | 11.34 |
| CDY50446 | Canola | mitochondrion | 4.07 | 10.46 |
| CDY05714 | Canola | cytosol | 1.95 | 5.63 |
| CDY31685 | Canola | cytosol | 0.16 | 4.55 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.1330.80 | Gene3D:3.30.40.10 | GO:A0A078DMQ8 | EnsemblPlants:CDX90435 | ProteinID:CDX90435 |
| ProteinID:CDX90435.1 | EnsemblPlantsGene:GSBRNA2T00151045001 | InterPro:IPR001841 | InterPro:IPR005175 | InterPro:IPR013083 | PFAM:PF03479 |
| PFAM:PF13639 | InterPro:PPC_dom | PFscan:PS50089 | PFscan:PS51742 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF305 |
| SMART:SM00184 | SUPFAM:SSF117856 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0004EE9C95 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaA03g43460D
Coordinates
chrLK031863:+:197124..200232
Molecular Weight (calculated)
66982.7 Da
IEP (calculated)
5.884
GRAVY (calculated)
-0.364
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSKEPNQQ QQLQPPHGTL TGSYNRNAAA LTGPTSTSQA MHQWLSVGDL SQRQPQQPWM QFGNEQLGRG RLRKYASDVI DLSLRLGGGG GASANSSDPP
101: PVKRTRRRPP GPVKTQLNAL GGAGTPFISD IIEVEAGEDI AAKIVAYTHQ AGPREVVIIS ASGAVSSALL NSPSGVFKFE GQYEIVAMSG SFLNTESNGT
201: VTITGDLSVS LANQNGKIVG GFVAGMLVAA SLVQVGVGSF VPERVVENNP EAASASATAS GGGLNDSKSP LHQVGNSTPQ PPDQMCDLRL WPGSNPHSIV
301: FLVYEKSHGG DNPSPTAIMP TIPSPLPPQE HYVTPPLTVI FTVVFLIFIF VGFFTLYFCK CILDTIMQAW HIHHSGETEA TDNPLQPPEA PLVNPGLDLR
401: IINSFPTFPY FSVKDLREEK YGLECAICLL EFDEDHVLRL LTTCYHVFHQ ECIDLWFESH KTCPVCRHDL DPPPPPENTS NVLSNVDEMI INVIQETSYD
501: DGDQHHHHQT TTPIDTGTSS GQSSCVNNEI SRKEQTLPET FSRSHSTGHS IVRNKPEEED KYTLRLPEHV KIKVTRGHSQ TKSCVTFAEL VRRSYDHRRF
601: GEVSNQTVAT HSGE
101: PVKRTRRRPP GPVKTQLNAL GGAGTPFISD IIEVEAGEDI AAKIVAYTHQ AGPREVVIIS ASGAVSSALL NSPSGVFKFE GQYEIVAMSG SFLNTESNGT
201: VTITGDLSVS LANQNGKIVG GFVAGMLVAA SLVQVGVGSF VPERVVENNP EAASASATAS GGGLNDSKSP LHQVGNSTPQ PPDQMCDLRL WPGSNPHSIV
301: FLVYEKSHGG DNPSPTAIMP TIPSPLPPQE HYVTPPLTVI FTVVFLIFIF VGFFTLYFCK CILDTIMQAW HIHHSGETEA TDNPLQPPEA PLVNPGLDLR
401: IINSFPTFPY FSVKDLREEK YGLECAICLL EFDEDHVLRL LTTCYHVFHQ ECIDLWFESH KTCPVCRHDL DPPPPPENTS NVLSNVDEMI INVIQETSYD
501: DGDQHHHHQT TTPIDTGTSS GQSSCVNNEI SRKEQTLPET FSRSHSTGHS IVRNKPEEED KYTLRLPEHV KIKVTRGHSQ TKSCVTFAEL VRRSYDHRRF
601: GEVSNQTVAT HSGE
001: MSTIIPSPLA PQPPQQHYVT PPLTVILTVI LLVFFFIGFF TLYFCKCFLD TMVQAWRLHH GGDTVSDNPL QQPEAPPVNP GLELRIINSF PTFPYSSVKD
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN
Arabidopsis Description
ATL29RING-H2 finger protein ATL29 [Source:UniProtKB/Swiss-Prot;Acc:O49691]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.