Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31686 | Canola | nucleus | 52.67 | 75.24 |
| CDY31685 | Canola | cytosol | 10.67 | 72.73 |
| Bra017320.1-P | Field mustard | extracellular, nucleus, plasma membrane | 99.33 | 44.35 |
| AT2G35420.1 | Thale cress | plasma membrane, plastid | 74.0 | 43.7 |
| KRH53320 | Soybean | mitochondrion | 14.0 | 19.81 |
| GSMUA_Achr4P12270_001 | Banana | plastid | 19.33 | 16.76 |
| TraesCS1A01G192600.1 | Wheat | plastid | 23.33 | 16.59 |
| Os10t0574400-01 | Rice | mitochondrion, plasma membrane, plastid | 21.33 | 16.08 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plasma membrane | 18.0 | 16.07 |
| Zm00001d030038_P001 | Maize | plastid | 24.67 | 15.95 |
| CDY48058 | Canola | extracellular | 14.67 | 15.94 |
| OQU92087 | Sorghum | golgi, peroxisome, plastid | 26.0 | 15.66 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 14.67 | 15.49 |
| CDX75097 | Canola | extracellular | 14.0 | 15.22 |
| KRH14610 | Soybean | endoplasmic reticulum, nucleus, plastid | 16.67 | 14.2 |
| CDY05049 | Canola | plasma membrane | 25.33 | 13.01 |
| CDX90377 | Canola | extracellular, golgi | 26.67 | 12.99 |
| CDY39477 | Canola | extracellular | 26.67 | 12.9 |
| CDY01502 | Canola | plasma membrane | 24.67 | 12.46 |
| CDY35174 | Canola | plasma membrane | 23.33 | 12.46 |
| CDY03202 | Canola | plasma membrane | 23.33 | 12.46 |
| CDX82175 | Canola | extracellular | 18.67 | 11.97 |
| CDX78812 | Canola | plasma membrane | 23.33 | 11.9 |
| CDY44502 | Canola | plasma membrane | 23.33 | 11.9 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 22.67 | 11.85 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 22.67 | 11.85 |
| KRH31340 | Soybean | endoplasmic reticulum, plasma membrane | 17.33 | 11.56 |
| CDX82179 | Canola | plasma membrane | 26.67 | 11.4 |
| CDY53236 | Canola | plasma membrane | 26.0 | 11.24 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 25.33 | 11.21 |
| CDX82176 | Canola | extracellular | 25.33 | 10.41 |
| CDY03116 | Canola | plasma membrane | 24.0 | 10.2 |
| CDY12022 | Canola | plasma membrane | 24.0 | 10.2 |
| CDY03652 | Canola | plasma membrane | 26.67 | 10.1 |
| CDY18787 | Canola | plasma membrane | 26.0 | 10.08 |
| CDX99986 | Canola | plasma membrane | 23.33 | 10.03 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 23.33 | 10.0 |
| CDY25038 | Canola | plasma membrane | 24.67 | 10.0 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 20.0 | 9.87 |
| CDY05577 | Canola | plasma membrane | 24.67 | 9.69 |
| CDX80653 | Canola | plasma membrane | 19.33 | 9.57 |
| CDY03651 | Canola | plasma membrane | 25.33 | 9.43 |
| CDX86163 | Canola | plasma membrane | 18.67 | 9.33 |
| CDY70284 | Canola | plasma membrane | 24.0 | 9.25 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 22.67 | 9.24 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 22.67 | 9.24 |
| CDY62007 | Canola | golgi, plasma membrane | 22.67 | 9.04 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 18.67 | 8.95 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 18.67 | 8.95 |
| CDY13888 | Canola | plasma membrane | 22.0 | 8.92 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 22.0 | 8.89 |
| CDY21367 | Canola | golgi, plasma membrane | 22.0 | 8.78 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 21.33 | 8.36 |
| CDY05713 | Canola | extracellular | 8.0 | 8.16 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 22.0 | 7.95 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 22.0 | 7.91 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 22.0 | 7.91 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 21.33 | 7.84 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 21.33 | 7.82 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 18.0 | 7.65 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 20.0 | 7.14 |
| CDX70126 | Canola | plasma membrane | 18.0 | 6.7 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 12.67 | 6.27 |
| CDX90435 | Canola | nucleus | 24.67 | 6.03 |
| CDY50446 | Canola | mitochondrion | 9.33 | 5.86 |
| CDY05714 | Canola | cytosol | 6.67 | 4.69 |
| CDY05145 | Canola | plasma membrane | 5.33 | 2.69 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 5.33 | 2.66 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 4.0 | 2.52 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 4.0 | 2.52 |
Protein Annotations
| EnsemblPlants:CDY62419 | EnsemblPlantsGene:GSBRNA2T00036250001 | Gene3D:3.30.40.10 | GO:A0A078J742 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF305 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY62419 | ProteinID:CDY62419.1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EECC8A | UniProt:A0A078J742 |
| MapMan:19.2.2.1.5.3.3 | : | : | : | : | : |
Description
BnaA06g39360DBnaA06g39360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J742]
Coordinates
chrLK034141:+:27133..27864
Molecular Weight (calculated)
16883.7 Da
IEP (calculated)
6.222
GRAVY (calculated)
-0.472
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNQCTECAI CLAEFSDEDT VRLITVCRHG FHSTCIDSWF ESHKTCPVCR CELDPGVVGS GSHESLHNTV TITIQDLNYE EVNPPSTSSS KRLMEASAWR
101: FSRSYSTGQF MGKTRDVAMK IKGRHYQTGS CASFDELTRY DEATGYGMAW
101: FSRSYSTGQF MGKTRDVAMK IKGRHYQTGS CASFDELTRY DEATGYGMAW
001: MSSTTSIDSI PATAVFPSVS MPVTVVLTGV LLFVIFAGFF SLFLWQFLLN RLFTTWNLQR TPYGDLIHVA TPPENTGLDP FIIRSFPVFH YSSATKKNHG
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV
101: TECAICLSEF SDEDTVRLIT VCRHPFHSNC IDLWFELHKT CPVCRCELDP GMIGSGRLES FHNTVTITIQ DINHDEENPP TAGSSKRLIE ASAWRFSRSH
201: STGHFMVKTT DANVKSKRRH YQTGSCVSFD ELTRYEGAGW QWLGDSSHIS RIEV
Arabidopsis Description
ATL28RING-H2 finger protein ATL28 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKR1]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.