Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70126 | Canola | plasma membrane | 95.47 | 83.62 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 84.99 | 73.71 |
| KRH62179 | Soybean | plasma membrane | 43.63 | 45.83 |
| VIT_11s0052g00530.t01 | Wine grape | plasma membrane | 55.81 | 43.11 |
| PGSC0003DMT400078951 | Potato | plasma membrane | 47.03 | 39.34 |
| Solyc07g007440.1.1 | Tomato | plasma membrane, vacuole | 46.18 | 38.81 |
| Zm00001d014612_P001 | Maize | peroxisome | 43.63 | 38.79 |
| KRH70712 | Soybean | endoplasmic reticulum, extracellular, vacuole | 22.95 | 38.03 |
| Os06t0695900-01 | Rice | endoplasmic reticulum, vacuole | 42.49 | 37.59 |
| GSMUA_Achr9P13810_001 | Banana | golgi, mitochondrion, plastid, vacuole | 38.81 | 37.23 |
| TraesCSU01G093700.1 | Wheat | plastid | 41.93 | 37.19 |
| EER90301 | Sorghum | endoplasmic reticulum, golgi, vacuole | 42.21 | 37.06 |
| HORVU7Hr1G098470.1 | Barley | plastid | 41.93 | 37.0 |
| TraesCS7D01G420000.1 | Wheat | plastid | 41.93 | 36.91 |
| TraesCS7B01G327800.1 | Wheat | plastid | 41.93 | 36.82 |
| GSMUA_Achr3P05190_001 | Banana | endoplasmic reticulum, golgi, plastid | 39.09 | 35.94 |
| CDY05713 | Canola | extracellular | 14.16 | 34.01 |
| CDX75097 | Canola | extracellular | 11.05 | 28.26 |
| CDY13888 | Canola | plasma membrane | 29.18 | 27.84 |
| CDY48058 | Canola | extracellular | 10.76 | 27.54 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 11.05 | 27.46 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 32.01 | 27.23 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 28.61 | 27.22 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 29.18 | 26.89 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 31.44 | 26.43 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 30.88 | 26.14 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 30.31 | 25.66 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 29.46 | 25.49 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 29.18 | 25.18 |
| CDY31686 | Canola | nucleus | 7.37 | 24.76 |
| CDX82175 | Canola | extracellular | 13.88 | 20.94 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 16.71 | 20.56 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 16.43 | 20.21 |
| CDY39477 | Canola | extracellular | 17.56 | 20.0 |
| CDX90377 | Canola | extracellular, golgi | 17.28 | 19.81 |
| CDX80653 | Canola | plasma membrane | 16.71 | 19.47 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 16.71 | 19.41 |
| CDX86163 | Canola | plasma membrane | 16.43 | 19.33 |
| CDY35174 | Canola | plasma membrane | 15.3 | 19.22 |
| CDY03202 | Canola | plasma membrane | 15.3 | 19.22 |
| CDX99986 | Canola | plasma membrane | 18.7 | 18.91 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 18.41 | 18.57 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 16.43 | 18.53 |
| CDY53236 | Canola | plasma membrane | 18.13 | 18.44 |
| CDY44502 | Canola | plasma membrane | 15.3 | 18.37 |
| CDX78812 | Canola | plasma membrane | 15.3 | 18.37 |
| CDX82179 | Canola | plasma membrane | 18.13 | 18.23 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 16.15 | 18.21 |
| CDY62419 | Canola | cytosol | 7.65 | 18.0 |
| CDY25038 | Canola | plasma membrane | 18.41 | 17.57 |
| CDY01502 | Canola | plasma membrane | 14.73 | 17.51 |
| CDY05049 | Canola | plasma membrane | 14.45 | 17.47 |
| CDY18787 | Canola | plasma membrane | 18.98 | 17.31 |
| CDY62007 | Canola | golgi, plasma membrane | 18.41 | 17.29 |
| CDY21367 | Canola | golgi, plasma membrane | 18.41 | 17.29 |
| CDY05577 | Canola | plasma membrane | 18.41 | 17.02 |
| CDY70284 | Canola | plasma membrane | 18.41 | 16.71 |
| CDY03651 | Canola | plasma membrane | 18.98 | 16.63 |
| CDY05714 | Canola | cytosol | 9.63 | 15.96 |
| CDX82176 | Canola | extracellular | 16.15 | 15.62 |
| CDY03652 | Canola | plasma membrane | 17.28 | 15.4 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 14.73 | 15.34 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 15.86 | 15.22 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 15.86 | 15.22 |
| CDY12022 | Canola | plasma membrane | 14.73 | 14.73 |
| CDY03116 | Canola | plasma membrane | 14.73 | 14.73 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 7.65 | 11.34 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 7.08 | 10.5 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 8.5 | 9.9 |
| CDY05145 | Canola | plasma membrane | 7.65 | 9.09 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 7.65 | 8.97 |
| CDX90435 | Canola | nucleus | 14.73 | 8.47 |
| CDY50446 | Canola | mitochondrion | 4.53 | 6.69 |
| CDY31685 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX98867 | EnsemblPlantsGene:GSBRNA2T00106970001 | Gene3D:3.30.40.10 | GO:A0A078ECT9 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF78 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX98867 | ProteinID:CDX98867.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI0004EDC5AD | MapMan:19.2.2.1.5.3.3 | : | : | : | : |
Description
BnaC09g49680D
Coordinates
chrLK031907:+:364245..365306
Molecular Weight (calculated)
39557.8 Da
IEP (calculated)
9.518
GRAVY (calculated)
-0.441
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGIAVVIAV LTAVFSLTFL ILLYVKHCKR RNGYVNDTQR FATSRYYGGG GYGGGGVGRK TSGIDRSVIE SLPVFRFGAL SGHKEGLECA VCLARFEPTE
101: VLRLLPKCKH AFHVECVDTW LDAHSTCPLC RYRVDPEDIL LISDCNSWFE LRLSNNRREE SNNNNNNTGS TRFDFVSRIS GRHSSAGERA SRLNEVRTSS
201: SSKSIPISIR RSLDSSLRIN DGEEKTDSVA VAVGCFDRNQ QRKDGLLLNS NRESFEARFE HRIIISGGNR DQRWSEVRPA DLLYLRSEMI LSDCRKLAAA
301: EDGREVIGGR SVSELTSIDR RRRWGGEPRQ RQATAVISRW LAWSHRPSAS SAV
101: VLRLLPKCKH AFHVECVDTW LDAHSTCPLC RYRVDPEDIL LISDCNSWFE LRLSNNRREE SNNNNNNTGS TRFDFVSRIS GRHSSAGERA SRLNEVRTSS
201: SSKSIPISIR RSLDSSLRIN DGEEKTDSVA VAVGCFDRNQ QRKDGLLLNS NRESFEARFE HRIIISGGNR DQRWSEVRPA DLLYLRSEMI LSDCRKLAAA
301: EDGREVIGGR SVSELTSIDR RRRWGGEPRQ RQATAVISRW LAWSHRPSAS SAV
001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
Arabidopsis Description
ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.