Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013268.1-P | Field mustard | plasma membrane | 99.32 | 99.32 |
| CDY44502 | Canola | plasma membrane | 98.3 | 98.3 |
| AT4G17920.1 | Thale cress | plasma membrane | 81.97 | 83.39 |
| CDY01502 | Canola | plasma membrane | 79.93 | 79.12 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 58.5 | 59.93 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 57.48 | 58.88 |
| CDY03202 | Canola | plasma membrane | 55.1 | 57.65 |
| CDY35174 | Canola | plasma membrane | 54.76 | 57.3 |
| Solyc08g005110.1.1 | Tomato | plastid | 38.78 | 41.61 |
| CDX90435 | Canola | nucleus | 79.59 | 38.11 |
| KRH74402 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 37.07 | 37.85 |
| KRH75596 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 38.44 | 36.69 |
| Solyc08g076800.2.1 | Tomato | plastid | 33.33 | 34.63 |
| CDY31686 | Canola | nucleus | 11.9 | 33.33 |
| KRH45424 | Soybean | endoplasmic reticulum, plasma membrane | 34.69 | 33.01 |
| CDY48058 | Canola | extracellular | 13.95 | 29.71 |
| CDX75097 | Canola | extracellular | 13.61 | 28.99 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.53 | 25.66 |
| CDX90377 | Canola | extracellular, golgi | 26.87 | 25.65 |
| CDY39477 | Canola | extracellular | 26.87 | 25.48 |
| CDY53236 | Canola | plasma membrane | 28.91 | 24.5 |
| CDX82175 | Canola | extracellular | 19.05 | 23.93 |
| CDY62419 | Canola | cytosol | 11.9 | 23.33 |
| CDX80653 | Canola | plasma membrane | 23.47 | 22.77 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 24.15 | 22.68 |
| CDX99986 | Canola | plasma membrane | 26.87 | 22.64 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.87 | 22.57 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 23.81 | 22.36 |
| CDY18787 | Canola | plasma membrane | 29.25 | 22.22 |
| CDX86163 | Canola | plasma membrane | 22.45 | 22.0 |
| CDY25038 | Canola | plasma membrane | 27.21 | 21.62 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 10.2 | 21.13 |
| CDY05577 | Canola | plasma membrane | 27.21 | 20.94 |
| CDY05713 | Canola | extracellular | 10.2 | 20.41 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 25.17 | 20.11 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 24.83 | 19.84 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 22.79 | 19.76 |
| CDY05049 | Canola | plasma membrane | 19.39 | 19.52 |
| CDX82176 | Canola | extracellular | 23.81 | 19.18 |
| CDY03116 | Canola | plasma membrane | 22.79 | 18.98 |
| CDY12022 | Canola | plasma membrane | 22.79 | 18.98 |
| CDY70284 | Canola | plasma membrane | 24.83 | 18.77 |
| CDX82179 | Canola | plasma membrane | 22.11 | 18.52 |
| CDY62007 | Canola | golgi, plasma membrane | 23.47 | 18.35 |
| CDY21367 | Canola | golgi, plasma membrane | 23.47 | 18.35 |
| CDY03651 | Canola | plasma membrane | 24.83 | 18.11 |
| CDY03652 | Canola | plasma membrane | 23.81 | 17.68 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 18.37 | 15.3 |
| CDY13888 | Canola | plasma membrane | 18.03 | 14.32 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 18.03 | 14.29 |
| CDX70126 | Canola | plasma membrane | 19.39 | 14.14 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 19.39 | 13.97 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 19.39 | 13.94 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 18.03 | 13.84 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 19.05 | 13.43 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 19.05 | 13.43 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 19.05 | 13.33 |
| CDY05145 | Canola | plasma membrane | 13.27 | 13.13 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 10.54 | 13.03 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 18.37 | 13.01 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 13.27 | 12.87 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 12.93 | 12.62 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 10.2 | 12.61 |
| CDY50446 | Canola | mitochondrion | 8.16 | 10.04 |
| CDY05714 | Canola | cytosol | 3.74 | 5.16 |
| CDY31685 | Canola | cytosol | 0.34 | 4.55 |
Protein Annotations
| EnsemblPlants:CDX78812 | EnsemblPlantsGene:GSBRNA2T00131282001 | Gene3D:3.30.40.10 | GO:A0A078CQ06 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF305 | PFAM:PF13639 | PFscan:PS50089 | ProteinID:CDX78812 | ProteinID:CDX78812.1 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0004EE34EA | MapMan:19.2.2.1.5.3.3 | : |
Description
BnaA01g08790D
Coordinates
chrLK031816:-:207800..208684
Molecular Weight (calculated)
33723.8 Da
IEP (calculated)
5.344
GRAVY (calculated)
-0.463
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTYPSSLPP HSPSENYVTP PLTVILTVIL LVFFFIGFFT LYFCKCFLDA MMQAWRLRHG GEAEATENSI QPPEAPMVNP GLELRIINSF PTFPYSSVKD
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHKTCPV CRHDLDPPPP ENTTITLPNV DEMIIDVIQE NSDDDQHHQI TTQIDTWPSS
201: GQNSCLNSER SRKEQTLPDK FSRSHSTGHS IVRNKPEEED RYTLRLPEHV KIKVTRGHGQ TESCVTFGEI IRNKCDHRRF GEVSNQTVVT QSEN
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHKTCPV CRHDLDPPPP ENTTITLPNV DEMIIDVIQE NSDDDQHHQI TTQIDTWPSS
201: GQNSCLNSER SRKEQTLPDK FSRSHSTGHS IVRNKPEEED RYTLRLPEHV KIKVTRGHGQ TESCVTFGEI IRNKCDHRRF GEVSNQTVVT QSEN
001: MSTIIPSPLA PQPPQQHYVT PPLTVILTVI LLVFFFIGFF TLYFCKCFLD TMVQAWRLHH GGDTVSDNPL QQPEAPPVNP GLELRIINSF PTFPYSSVKD
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN
101: LREEKYGLEC AICLLEFDGD HVLRLLTTCY HVFHQECIDL WFESHRTCPV CRRDLDPPPP PENTKPTVDE MIIDVIQETS DDEEDDHHRQ QTTTQIDTWP
201: SSGQTSSIKK EQNLPEKFSR SHSTGHSIVR NKPEEEDKYT LRLPEHVKIK VTRGHSQTES CVTFAELIRN RGYDHRRFGE VSGQTQSKN
Arabidopsis Description
ATL29RING-H2 finger protein ATL29 [Source:UniProtKB/Swiss-Prot;Acc:O49691]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.