Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- mitochondrion 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025008.1-P | Field mustard | plastid | 97.91 | 97.91 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 97.91 | 97.91 |
| CDY03202 | Canola | plasma membrane | 81.18 | 82.92 |
| CDY35174 | Canola | plasma membrane | 80.84 | 82.56 |
| AT5G46650.1 | Thale cress | plasma membrane | 82.23 | 81.66 |
| CDX78812 | Canola | plasma membrane | 59.93 | 58.5 |
| CDY44502 | Canola | plasma membrane | 59.58 | 58.16 |
| CDY01502 | Canola | plasma membrane | 56.45 | 54.55 |
| Solyc08g005110.1.1 | Tomato | plastid | 39.37 | 41.24 |
| KRH74402 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 35.89 | 35.76 |
| KRH75596 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 38.33 | 35.71 |
| KRH45424 | Soybean | endoplasmic reticulum, plasma membrane | 35.54 | 33.01 |
| Solyc08g076800.2.1 | Tomato | plastid | 31.36 | 31.8 |
| CDY31686 | Canola | nucleus | 11.5 | 31.43 |
| CDX75097 | Canola | extracellular | 14.29 | 29.71 |
| CDY48058 | Canola | extracellular | 13.94 | 28.99 |
| CDX90435 | Canola | nucleus | 56.1 | 26.22 |
| CDY05713 | Canola | extracellular | 12.89 | 25.17 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.13 | 24.67 |
| CDX90377 | Canola | extracellular, golgi | 26.13 | 24.35 |
| CDY39477 | Canola | extracellular | 26.13 | 24.19 |
| CDY53236 | Canola | plasma membrane | 28.57 | 23.63 |
| CDX82175 | Canola | extracellular | 19.16 | 23.5 |
| CDX80653 | Canola | plasma membrane | 24.04 | 22.77 |
| CDY62419 | Canola | cytosol | 11.85 | 22.67 |
| CDX99986 | Canola | plasma membrane | 27.18 | 22.35 |
| CDY18787 | Canola | plasma membrane | 29.62 | 21.96 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.48 | 21.71 |
| CDX86163 | Canola | plasma membrane | 22.65 | 21.67 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 23.34 | 21.41 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 10.45 | 21.13 |
| CDY25038 | Canola | plasma membrane | 27.18 | 21.08 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 26.48 | 20.65 |
| CDY05049 | Canola | plasma membrane | 20.91 | 20.55 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 22.3 | 20.45 |
| CDY05577 | Canola | plasma membrane | 27.18 | 20.42 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 26.13 | 20.38 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 23.69 | 20.06 |
| CDX82176 | Canola | extracellular | 24.74 | 19.45 |
| CDY70284 | Canola | plasma membrane | 25.09 | 18.51 |
| CDY12022 | Canola | plasma membrane | 22.65 | 18.41 |
| CDX82179 | Canola | plasma membrane | 22.3 | 18.23 |
| CDY03651 | Canola | plasma membrane | 25.09 | 17.87 |
| CDY03116 | Canola | plasma membrane | 21.95 | 17.85 |
| CDY62007 | Canola | golgi, plasma membrane | 23.0 | 17.55 |
| CDY21367 | Canola | golgi, plasma membrane | 23.0 | 17.55 |
| CDY03652 | Canola | plasma membrane | 24.04 | 17.42 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 20.56 | 16.71 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 21.6 | 16.71 |
| CDY13888 | Canola | plasma membrane | 20.91 | 16.22 |
| CDX70126 | Canola | plasma membrane | 22.3 | 15.88 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 20.21 | 15.14 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 20.91 | 14.39 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 20.91 | 14.29 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 20.21 | 14.22 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 20.21 | 14.18 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 20.56 | 14.15 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 20.21 | 13.98 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 14.63 | 13.86 |
| CDY05145 | Canola | plasma membrane | 13.24 | 12.79 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 12.89 | 12.29 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 9.76 | 11.76 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 9.41 | 11.34 |
| CDY50446 | Canola | mitochondrion | 6.62 | 7.95 |
| CDY05714 | Canola | cytosol | 4.18 | 5.63 |
| CDY31685 | Canola | cytosol | 0.35 | 4.55 |
Protein Annotations
| EnsemblPlants:CDX77681 | EnsemblPlantsGene:GSBRNA2T00128647001 | Gene3D:3.30.40.10 | GO:A0A078CKF4 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF305 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX77681 | ProteinID:CDX77681.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI0004EE80FD | MapMan:19.2.2.1.5.3.3 | : | : | : | : |
Description
BnaC07g19350D
Coordinates
chrLK031812:+:820134..820997
Molecular Weight (calculated)
32768.8 Da
IEP (calculated)
7.271
GRAVY (calculated)
-0.576
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MPITKPLGSN TTLRSQPPHQ YSKPPLLVIL TVILLVVFFI GFCALYFCKC FFHTVSQAWD RRYGNRSPGN QIQSQQENAS QPPVNPGLEP HIIQSFPLFP
101: FSSVKDLRED NQGLECAICL LEFEEEHVLL RLLTTCYHVF HQECIDRWLD SNKTCPVCRR NLDPNAPENI KELIIEVIHE NSNGNHEQPS TSNEVSLSRQ
201: SSSSGKTEPL PDKFSRSKTT GHSIVRNKPE EEDRYTLRLP DHVKIKVTRR HNNNQTESCI SFGELMRNRQ GRFGELSGQS LVPESQS
101: FSSVKDLRED NQGLECAICL LEFEEEHVLL RLLTTCYHVF HQECIDRWLD SNKTCPVCRR NLDPNAPENI KELIIEVIHE NSNGNHEQPS TSNEVSLSRQ
201: SSSSGKTEPL PDKFSRSKTT GHSIVRNKPE EEDRYTLRLP DHVKIKVTRR HNNNQTESCI SFGELMRNRQ GRFGELSGQS LVPESQS
001: MPIAKPINQN TTVPYPPQHY SKPPLVIILT VILLVVFFIG FFAIYFCKCF YHTLTEAWNH HYHNGLPENQ IQAQQEPVQP PVNPGLEPHI IQSYPLFPFS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS
Arabidopsis Description
ATL30RING-H2 finger protein ATL30 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.