Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009136.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 98.01 | 97.77 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 83.62 | 95.47 |
| AT5G05810.1 | Thale cress | endoplasmic reticulum, golgi | 83.13 | 82.31 |
| KRH62179 | Soybean | plasma membrane | 41.44 | 49.7 |
| VIT_11s0052g00530.t01 | Wine grape | plasma membrane | 54.84 | 48.36 |
| PGSC0003DMT400078951 | Potato | plasma membrane | 44.17 | 42.18 |
| Solyc07g007440.1.1 | Tomato | plasma membrane, vacuole | 43.18 | 41.43 |
| Zm00001d014612_P001 | Maize | peroxisome | 40.45 | 41.06 |
| Os06t0695900-01 | Rice | endoplasmic reticulum, vacuole | 40.2 | 40.6 |
| CDY05713 | Canola | extracellular | 14.64 | 40.14 |
| GSMUA_Achr9P13810_001 | Banana | golgi, mitochondrion, plastid, vacuole | 36.48 | 39.95 |
| KRH70712 | Soybean | endoplasmic reticulum, extracellular, vacuole | 21.09 | 39.91 |
| TraesCSU01G093700.1 | Wheat | plastid | 39.21 | 39.7 |
| HORVU7Hr1G098470.1 | Barley | plastid | 39.21 | 39.5 |
| TraesCS7D01G420000.1 | Wheat | plastid | 39.21 | 39.4 |
| EER90301 | Sorghum | endoplasmic reticulum, golgi, vacuole | 39.21 | 39.3 |
| TraesCS7B01G327800.1 | Wheat | plastid | 39.21 | 39.3 |
| GSMUA_Achr3P05190_001 | Banana | endoplasmic reticulum, golgi, plastid | 36.72 | 38.54 |
| CDY13888 | Canola | plasma membrane | 28.04 | 30.54 |
| CDX75097 | Canola | extracellular | 10.42 | 30.43 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 27.79 | 30.19 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 28.29 | 29.77 |
| CDY48058 | Canola | extracellular | 10.17 | 29.71 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 29.78 | 28.92 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 29.28 | 28.1 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 28.54 | 27.58 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 27.54 | 27.21 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 28.04 | 27.1 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 9.43 | 26.76 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 27.05 | 26.65 |
| CDY31686 | Canola | nucleus | 6.45 | 24.76 |
| CDX82175 | Canola | extracellular | 13.65 | 23.5 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 15.88 | 22.3 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 15.63 | 21.95 |
| CDY39477 | Canola | extracellular | 16.63 | 21.61 |
| CDX90377 | Canola | extracellular, golgi | 16.38 | 21.43 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 16.13 | 21.38 |
| CDX80653 | Canola | plasma membrane | 15.88 | 21.12 |
| CDX86163 | Canola | plasma membrane | 15.63 | 21.0 |
| CDY35174 | Canola | plasma membrane | 14.14 | 20.28 |
| CDY03202 | Canola | plasma membrane | 14.14 | 20.28 |
| CDY53236 | Canola | plasma membrane | 17.12 | 19.88 |
| CDX99986 | Canola | plasma membrane | 17.12 | 19.77 |
| CDY44502 | Canola | plasma membrane | 14.14 | 19.39 |
| CDX78812 | Canola | plasma membrane | 14.14 | 19.39 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 14.89 | 19.17 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 14.89 | 19.17 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 16.63 | 19.14 |
| CDY01502 | Canola | plasma membrane | 13.9 | 18.86 |
| CDY25038 | Canola | plasma membrane | 17.12 | 18.65 |
| CDY21367 | Canola | golgi, plasma membrane | 17.37 | 18.62 |
| CDY18787 | Canola | plasma membrane | 17.87 | 18.6 |
| CDY05049 | Canola | plasma membrane | 13.4 | 18.49 |
| CDY62007 | Canola | golgi, plasma membrane | 17.12 | 18.35 |
| CDY05577 | Canola | plasma membrane | 17.37 | 18.32 |
| CDY70284 | Canola | plasma membrane | 17.62 | 18.25 |
| CDY03651 | Canola | plasma membrane | 18.11 | 18.11 |
| CDY62419 | Canola | cytosol | 6.7 | 18.0 |
| CDX82179 | Canola | plasma membrane | 15.63 | 17.95 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 16.13 | 17.66 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 15.63 | 17.12 |
| CDX82176 | Canola | extracellular | 15.38 | 16.99 |
| CDY12022 | Canola | plasma membrane | 14.39 | 16.43 |
| CDY03116 | Canola | plasma membrane | 14.39 | 16.43 |
| CDY03652 | Canola | plasma membrane | 16.13 | 16.41 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 13.65 | 16.22 |
| CDY05714 | Canola | cytosol | 8.44 | 15.96 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 6.95 | 11.76 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 6.45 | 10.92 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 8.19 | 10.89 |
| CDY05145 | Canola | plasma membrane | 7.44 | 10.1 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 7.44 | 9.97 |
| CDX90435 | Canola | nucleus | 13.9 | 9.12 |
| CDY50446 | Canola | mitochondrion | 4.22 | 7.11 |
| CDY31685 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX70126 | EnsemblPlantsGene:GSBRNA2T00136236001 | Gene3D:3.30.40.10 | GO:A0A078BZK8 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF78 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDX70126 | ProteinID:CDX70126.1 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00184 | SUPFAM:SSF57850 |
| TMHMM:TMhelix | UniParc:UPI0004EF3264 | MapMan:19.2.2.1.5.3.3 | : | : | : |
Description
BnaA10g24750D
Coordinates
chrLK031790:-:3246138..3247349
Molecular Weight (calculated)
45118.5 Da
IEP (calculated)
9.484
GRAVY (calculated)
-0.375
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSSLLLV SLLSLFLNSS LADNDRYNTT AVVIMNPTTP PPLPPPSPLQ RHNVTSSFMP GIAVVIAVLT VVFSLTFLLL LYVKHCKRRN GYVNDTQRFA
101: TSRYYGGGGY GGGGVGRKNS GIDRSVIESL PVFRFGALSG HKEGLECAVC LARFEPTEVL RLLPKCKHAF HVECVDTWLD AHSTCPLCRY RVDPEDILLI
201: SDCNSWFELR LSNNRREESN NNNNTGSTRF DFVSRISGRH SSAGERASRL NDVRKFSSFR RSLDSSLRIN DGEEKTDSVA VAVGCFDRNQ QRKDGLLLNS
301: NRESFEARFE HRIIISGGNR DQRWSEVRPA DLLYLRSEMI LSDCRKLAAA EDGREVISGR SVSELTSIDR RRRWGGEPRQ RQATAVISRW LAWSHRPSAS
401: SAV
101: TSRYYGGGGY GGGGVGRKNS GIDRSVIESL PVFRFGALSG HKEGLECAVC LARFEPTEVL RLLPKCKHAF HVECVDTWLD AHSTCPLCRY RVDPEDILLI
201: SDCNSWFELR LSNNRREESN NNNNTGSTRF DFVSRISGRH SSAGERASRL NDVRKFSSFR RSLDSSLRIN DGEEKTDSVA VAVGCFDRNQ QRKDGLLLNS
301: NRESFEARFE HRIIISGGNR DQRWSEVRPA DLLYLRSEMI LSDCRKLAAA EDGREVISGR SVSELTSIDR RRRWGGEPRQ RQATAVISRW LAWSHRPSAS
401: SAV
001: MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
101: RYGGGYYNGG GVVGGRKNSG IDRSVIESLP VFRFGALSGH KDGLECAVCL ARFEPTEVLR LLPKCKHAFH VECVDTWLDA HSTCPLCRYR VDPEDILLIG
201: DCNSWFELQF SKDESNSVNN NPPGLTRFIP VSRISGRHSS AGERASRLNE IRTSSSYKSN PMSFRRSLDS SLKVNDAGEE KSESVAVNCL DRLQRKDGLL
301: LIPNRESFEG RFEHRIIISG GNRDDQRWSE VRPSDLLYLR SEMILSDCRK LAAAEGGRDV INGRSVSELT GIERRRRWGG EPRQRQATAV ISRWLAWSHR
401: ASASSIV
Arabidopsis Description
ATL43ATL43 [Source:UniProtKB/TrEMBL;Acc:A0A178ULT1]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.