Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017535.1-P | Field mustard | nucleus, plasma membrane, plastid | 99.64 | 99.64 |
| CDY03202 | Canola | plasma membrane | 95.73 | 95.73 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 82.56 | 80.84 |
| CDY63052 | Canola | golgi, mitochondrion, plasma membrane, plastid | 81.14 | 79.44 |
| AT5G46650.1 | Thale cress | plasma membrane | 79.36 | 77.16 |
| CDY44502 | Canola | plasma membrane | 57.65 | 55.1 |
| CDX78812 | Canola | plasma membrane | 57.3 | 54.76 |
| CDY01502 | Canola | plasma membrane | 54.8 | 51.85 |
| Solyc08g005110.1.1 | Tomato | plastid | 40.21 | 41.24 |
| KRH74402 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 34.88 | 34.03 |
| KRH75596 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 35.59 | 32.47 |
| CDY31686 | Canola | nucleus | 12.1 | 32.38 |
| Solyc08g076800.2.1 | Tomato | plastid | 32.03 | 31.8 |
| KRH45424 | Soybean | endoplasmic reticulum, plasma membrane | 33.45 | 30.42 |
| CDX75097 | Canola | extracellular | 12.81 | 26.09 |
| CDY48058 | Canola | extracellular | 12.46 | 25.36 |
| CDX90435 | Canola | nucleus | 54.45 | 24.92 |
| CDX90377 | Canola | extracellular, golgi | 26.69 | 24.35 |
| CDY39477 | Canola | extracellular | 26.69 | 24.19 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 25.98 | 24.01 |
| CDY62419 | Canola | cytosol | 12.46 | 23.33 |
| CDX80653 | Canola | plasma membrane | 24.91 | 23.1 |
| CDX82175 | Canola | extracellular | 19.22 | 23.08 |
| CDY53236 | Canola | plasma membrane | 28.11 | 22.77 |
| CDX99986 | Canola | plasma membrane | 27.76 | 22.35 |
| CDX86163 | Canola | plasma membrane | 23.49 | 22.0 |
| CDY05713 | Canola | extracellular | 11.39 | 21.77 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 27.05 | 21.71 |
| CDY25038 | Canola | plasma membrane | 28.47 | 21.62 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 10.68 | 21.13 |
| CDY05577 | Canola | plasma membrane | 28.11 | 20.68 |
| CDY18787 | Canola | plasma membrane | 28.47 | 20.67 |
| CDY05049 | Canola | plasma membrane | 20.64 | 19.86 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 21.71 | 19.49 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 25.27 | 19.29 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 23.13 | 19.17 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 21.35 | 19.17 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 24.91 | 19.02 |
| CDX82176 | Canola | extracellular | 23.84 | 18.36 |
| CDY70284 | Canola | plasma membrane | 25.27 | 18.25 |
| CDX82179 | Canola | plasma membrane | 22.42 | 17.95 |
| CDY12022 | Canola | plasma membrane | 22.42 | 17.85 |
| CDY03651 | Canola | plasma membrane | 25.27 | 17.62 |
| CDY03116 | Canola | plasma membrane | 21.71 | 17.28 |
| CDY03652 | Canola | plasma membrane | 24.2 | 17.17 |
| CDY21367 | Canola | golgi, plasma membrane | 22.78 | 17.02 |
| CDY62007 | Canola | golgi, plasma membrane | 22.78 | 17.02 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 19.22 | 15.3 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 19.57 | 14.82 |
| CDY13888 | Canola | plasma membrane | 19.22 | 14.59 |
| CDX70126 | Canola | plasma membrane | 20.28 | 14.14 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 19.22 | 14.1 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 14.95 | 13.86 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 19.93 | 13.43 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 19.93 | 13.43 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 19.93 | 13.33 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 19.22 | 13.01 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 18.51 | 12.75 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 18.51 | 12.71 |
| CDY05145 | Canola | plasma membrane | 11.74 | 11.11 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 9.25 | 10.92 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 11.39 | 10.63 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 8.9 | 10.5 |
| CDY50446 | Canola | mitochondrion | 7.47 | 8.79 |
| CDY05714 | Canola | cytosol | 3.56 | 4.69 |
| CDY31685 | Canola | cytosol | 0.36 | 4.55 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | GO:A0A078HCH0 | UniProt:A0A078HCH0 | EnsemblPlants:CDY35174 | ProteinID:CDY35174 |
| ProteinID:CDY35174.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00058068001 | InterPro:IPR001841 |
| InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF305 | SMART:SM00184 |
| SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0004EEDF61 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaA09g18110DBnaA09g18110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCH0]
Coordinates
chrLK032347:+:272325..273170
Molecular Weight (calculated)
32318.5 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.584
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPKPIGPNT TLESQPPHHY NNPQLVVILL LVLFIGFFAL CCCKCFFHTL SKAWDRLHRN GPPEDQIQSQ PEIDGQPPVN PGLEPQIIQS FPLFPFSSVK
101: NLREDKHGLE CAICLLEFEE EHVLLRLLTT CYHVFHQECI DRWLESNKTC PVCRRNLDPT ASENIKELII EVIHENSNGN QDQTSTSNEV LRSRQSKEVK
201: MESLPDKFSR SKTTGHSIVR NKPEEEDRFT LRLPDHVKIK VTRRHNNNQT ESCISFGELM RNREGRFGEL SGQSLVPESE N
101: NLREDKHGLE CAICLLEFEE EHVLLRLLTT CYHVFHQECI DRWLESNKTC PVCRRNLDPT ASENIKELII EVIHENSNGN QDQTSTSNEV LRSRQSKEVK
201: MESLPDKFSR SKTTGHSIVR NKPEEEDRFT LRLPDHVKIK VTRRHNNNQT ESCISFGELM RNREGRFGEL SGQSLVPESE N
001: MPIAKPINQN TTVPYPPQHY SKPPLVIILT VILLVVFFIG FFAIYFCKCF YHTLTEAWNH HYHNGLPENQ IQAQQEPVQP PVNPGLEPHI IQSYPLFPFS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS
Arabidopsis Description
ATL30RING-H2 finger protein ATL30 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.