Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025008.1-P | Field mustard | plastid | 99.3 | 99.3 |
| CDX77681 | Canola | golgi, mitochondrion, plasma membrane, plastid | 97.91 | 97.91 |
| AT5G46650.1 | Thale cress | plasma membrane | 82.58 | 82.01 |
| CDY35174 | Canola | plasma membrane | 79.44 | 81.14 |
| CDY03202 | Canola | plasma membrane | 79.44 | 81.14 |
| CDX78812 | Canola | plasma membrane | 58.88 | 57.48 |
| CDY44502 | Canola | plasma membrane | 58.54 | 57.14 |
| CDY01502 | Canola | plasma membrane | 55.4 | 53.54 |
| Solyc08g005110.1.1 | Tomato | plastid | 39.37 | 41.24 |
| KRH74402 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 35.54 | 35.42 |
| KRH75596 | Soybean | endoplasmic reticulum, plasma membrane, plastid | 37.98 | 35.39 |
| KRH45424 | Soybean | endoplasmic reticulum, plasma membrane | 35.54 | 33.01 |
| Solyc08g076800.2.1 | Tomato | plastid | 31.01 | 31.45 |
| CDY31686 | Canola | nucleus | 11.5 | 31.43 |
| CDX75097 | Canola | extracellular | 14.29 | 29.71 |
| CDY48058 | Canola | extracellular | 13.94 | 28.99 |
| CDY05713 | Canola | extracellular | 13.24 | 25.85 |
| CDX90435 | Canola | nucleus | 55.05 | 25.73 |
| CDX86162 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.13 | 24.67 |
| CDX90377 | Canola | extracellular, golgi | 26.13 | 24.35 |
| CDY39477 | Canola | extracellular | 26.13 | 24.19 |
| CDY53236 | Canola | plasma membrane | 28.57 | 23.63 |
| CDX82175 | Canola | extracellular | 19.16 | 23.5 |
| CDX80653 | Canola | plasma membrane | 24.04 | 22.77 |
| CDY62419 | Canola | cytosol | 11.85 | 22.67 |
| CDX99986 | Canola | plasma membrane | 27.18 | 22.35 |
| CDY18787 | Canola | plasma membrane | 29.62 | 21.96 |
| CDY19719 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.48 | 21.71 |
| CDX86163 | Canola | plasma membrane | 22.65 | 21.67 |
| CDY04519 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 10.45 | 21.13 |
| CDY31656 | Canola | cytosol, endoplasmic reticulum, plastid | 23.0 | 21.09 |
| CDY25038 | Canola | plasma membrane | 27.18 | 21.08 |
| CDX84269 | Canola | endoplasmic reticulum, plasma membrane, plastid | 26.48 | 20.65 |
| CDY05049 | Canola | plasma membrane | 20.91 | 20.55 |
| CDX84270 | Canola | cytosol, plastid, vacuole | 22.3 | 20.45 |
| CDY05577 | Canola | plasma membrane | 27.18 | 20.42 |
| CDY31657 | Canola | extracellular, plasma membrane, plastid | 26.13 | 20.38 |
| CDX90713 | Canola | extracellular, golgi, plasma membrane | 23.69 | 20.06 |
| CDX82176 | Canola | extracellular | 25.09 | 19.73 |
| CDY70284 | Canola | plasma membrane | 25.09 | 18.51 |
| CDY12022 | Canola | plasma membrane | 22.65 | 18.41 |
| CDX82179 | Canola | plasma membrane | 22.3 | 18.23 |
| CDY03651 | Canola | plasma membrane | 25.09 | 17.87 |
| CDY03116 | Canola | plasma membrane | 21.95 | 17.85 |
| CDY62007 | Canola | golgi, plasma membrane | 23.0 | 17.55 |
| CDY21367 | Canola | golgi, plasma membrane | 23.0 | 17.55 |
| CDY03652 | Canola | plasma membrane | 24.04 | 17.42 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 21.95 | 16.98 |
| CDY13888 | Canola | plasma membrane | 21.25 | 16.49 |
| CDX98867 | Canola | endoplasmic reticulum, golgi | 20.21 | 16.43 |
| CDX70126 | Canola | plasma membrane | 21.95 | 15.63 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 20.56 | 15.4 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 21.6 | 14.87 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 21.6 | 14.76 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 20.91 | 14.71 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 20.91 | 14.67 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 21.25 | 14.63 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 20.91 | 14.46 |
| CDY70750 | Canola | extracellular, mitochondrion, nucleus | 14.63 | 13.86 |
| CDY05145 | Canola | plasma membrane | 13.24 | 12.79 |
| CDY27787 | Canola | extracellular, plasma membrane, vacuole | 12.89 | 12.29 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 9.76 | 11.76 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 9.41 | 11.34 |
| CDY50446 | Canola | mitochondrion | 6.62 | 7.95 |
| CDY05714 | Canola | cytosol | 4.18 | 5.63 |
| CDY31685 | Canola | cytosol | 0.35 | 4.55 |
Protein Annotations
| MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | GO:A0A078JDM5 | UniProt:A0A078JDM5 | EnsemblPlants:CDY63052 | ProteinID:CDY63052 |
| ProteinID:CDY63052.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00037882001 | InterPro:IPR001841 |
| InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF305 | SMART:SM00184 |
| SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0004EF4CFD | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaA06g40420DBnaA06g40420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDM5]
Coordinates
chrLK034238:+:16007..16870
Molecular Weight (calculated)
32750.8 Da
IEP (calculated)
6.885
GRAVY (calculated)
-0.545
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MPITKPLGSN TTLRSQPPQQ YSKPPLFVIL TVILLVVFFI GFCALYFCKC FFHTVSHAWD SRYGNRSPGN QIQSQQENAS QPPVNPGLEP HIIQSFPLFP
101: FSSVKDLRED NQGLECAICL LEFEEEHILL RLLTTCYHVF HQECIDRWLD SNKTCPVCRR NLDPNAPENI KELIIEVIHE NSNGNHEQPS TSNEVSLSRQ
201: SSSSGMTEPL PDKFSRSKTT GHSIVRNKPE EEDRYTLRLP DHVKIKVTRR HNNNQTESCI SFGELMRNRQ GRFGELSGQS LVPESQS
101: FSSVKDLRED NQGLECAICL LEFEEEHILL RLLTTCYHVF HQECIDRWLD SNKTCPVCRR NLDPNAPENI KELIIEVIHE NSNGNHEQPS TSNEVSLSRQ
201: SSSSGMTEPL PDKFSRSKTT GHSIVRNKPE EEDRYTLRLP DHVKIKVTRR HNNNQTESCI SFGELMRNRQ GRFGELSGQS LVPESQS
001: MPIAKPINQN TTVPYPPQHY SKPPLVIILT VILLVVFFIG FFAIYFCKCF YHTLTEAWNH HYHNGLPENQ IQAQQEPVQP PVNPGLEPHI IQSYPLFPFS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS
Arabidopsis Description
ATL30RING-H2 finger protein ATL30 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.