CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35174	Canola	plasma membrane	95.73	95.73
Bra017535.1-P	Field mustard	nucleus, plasma membrane, plastid	95.37	95.37
CDX77681	Canola	golgi, mitochondrion, plasma membrane, plastid	82.92	81.18
CDY63052	Canola	golgi, mitochondrion, plasma membrane, plastid	81.14	79.44
AT5G46650.1	Thale cress	plasma membrane	79.72	77.51
CDX78812	Canola	plasma membrane	57.65	55.1
CDY44502	Canola	plasma membrane	57.65	55.1
CDY01502	Canola	plasma membrane	55.87	52.86
Solyc08g005110.1.1	Tomato	plastid	39.5	40.51
KRH74402	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	34.52	33.68
KRH75596	Soybean	endoplasmic reticulum, plasma membrane, plastid	35.59	32.47
CDY31686	Canola	nucleus	12.1	32.38
Solyc08g076800.2.1	Tomato	plastid	31.32	31.1
KRH45424	Soybean	endoplasmic reticulum, plasma membrane	33.45	30.42
CDX75097	Canola	extracellular	13.17	26.81
CDY48058	Canola	extracellular	12.81	26.09
CDX90435	Canola	nucleus	55.52	25.41
CDX90377	Canola	extracellular, golgi	27.05	24.68
CDX86162	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.33	24.34
CDY39477	Canola	extracellular	26.69	24.19
CDX82175	Canola	extracellular	19.57	23.5
CDX80653	Canola	plasma membrane	25.27	23.43
CDY62419	Canola	cytosol	12.46	23.33
CDY53236	Canola	plasma membrane	28.11	22.77
CDX99986	Canola	plasma membrane	28.11	22.64
CDX86163	Canola	plasma membrane	23.84	22.33
CDY19719	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.4	22.0
CDY25038	Canola	plasma membrane	28.83	21.89
CDY05713	Canola	extracellular	11.39	21.77
CDY05577	Canola	plasma membrane	28.47	20.94
CDY18787	Canola	plasma membrane	28.47	20.67
CDY04519	Canola	endoplasmic reticulum, extracellular, plasma membrane	10.32	20.42
CDY31656	Canola	cytosol, endoplasmic reticulum, plastid	22.42	20.13
CDY05049	Canola	plasma membrane	20.28	19.52
CDX84270	Canola	cytosol, plastid, vacuole	21.71	19.49
CDX90713	Canola	extracellular, golgi, plasma membrane	22.78	18.88
CDX84269	Canola	endoplasmic reticulum, plasma membrane, plastid	24.56	18.75
CDY31657	Canola	extracellular, plasma membrane, plastid	24.2	18.48
CDX82176	Canola	extracellular	23.84	18.36
CDY70284	Canola	plasma membrane	25.27	18.25
CDY12022	Canola	plasma membrane	22.78	18.13
CDX82179	Canola	plasma membrane	22.42	17.95
CDY03651	Canola	plasma membrane	25.27	17.62
CDY03116	Canola	plasma membrane	22.06	17.56
CDY03652	Canola	plasma membrane	24.2	17.17
CDY62007	Canola	golgi, plasma membrane	22.78	17.02
CDY21367	Canola	golgi, plasma membrane	22.78	17.02
CDX98867	Canola	endoplasmic reticulum, golgi	19.22	15.3
CDY35921	Canola	endoplasmic reticulum, extracellular, plasma membrane	19.57	14.82
CDY13888	Canola	plasma membrane	19.22	14.59
CDX70126	Canola	plasma membrane	20.28	14.14
CDX81954	Canola	endoplasmic reticulum, plasma membrane, vacuole	19.22	14.1
CDY70750	Canola	extracellular, mitochondrion, nucleus	14.95	13.86
CDY35230	Canola	endoplasmic reticulum, plasma membrane	19.93	13.43
CDY06859	Canola	endoplasmic reticulum, plasma membrane	19.93	13.43
CDY50930	Canola	endoplasmic reticulum, plasma membrane	19.93	13.33
CDX92900	Canola	endoplasmic reticulum, plasma membrane	19.22	13.01
CDX97460	Canola	endoplasmic reticulum, extracellular, plasma membrane	18.51	12.75
CDY66475	Canola	endoplasmic reticulum, plasma membrane	18.51	12.71
CDY05145	Canola	plasma membrane	12.1	11.45
CDY27787	Canola	extracellular, plasma membrane, vacuole	11.74	10.96
CDY12527	Canola	extracellular, plasma membrane, vacuole	9.25	10.92
CDY25739	Canola	endoplasmic reticulum, extracellular, plasma membrane	8.9	10.5
CDY50446	Canola	mitochondrion	7.47	8.79
CDY05714	Canola	cytosol	3.56	4.69
CDY31685	Canola	cytosol	0.36	4.55

Protein Annotations

EnsemblPlants:CDY03202	EnsemblPlantsGene:GSBRNA2T00115703001	Gene3D:3.30.40.10	GO:A0A078EQ55	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF305	PFAM:PF13639	PFscan:PS50089
ProteinID:CDY03202	ProteinID:CDY03202.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI0004EDC53C	MapMan:19.2.2.1.5.3.3	:	:	:	:

Description

BnaC09g19540D

Coordinates

chrLK031941:-:698856..699701

Molecular Weight (calculated)

32292.3 Da

IEP (calculated)

6.229

GRAVY (calculated)

-0.584

Length

281 amino acids

Sequence
(BLAST)

001: MLPKPIGPNT TLESRPPHHY NNPQLVVIIL LVLFIGFFAL CCCKCFFHTL SQAWDRLHSN GPPENQIQSQ QETDGQPPVN PGLEQQIIQS FPLFPFSSVK
101: NLREDKHGLE CAICLLEFEE EHVLLRLLTN CYHVFHQECI DRWLESNKTC PVCRRNLDPT APENIKELII EVIHENSNGN QDQTSTSNEV LLSRQSNEVK
201: MESLPDKFSR SKTTGHSIVR NKPEEEDRFT LRLPDHVKIK VTRRHNNNQT ESCISFGELM RNREGRFGEL SGQSLVPESE N

Best Arabidopsis Sequence Match ( AT5G46650.1 )
(BLAST)

001: MPIAKPINQN TTVPYPPQHY SKPPLVIILT VILLVVFFIG FFAIYFCKCF YHTLTEAWNH HYHNGLPENQ IQAQQEPVQP PVNPGLEPHI IQSYPLFPFS
101: SVKDLREDKY GLECAICLLE FEEEHILLRL LTTCYHVFHQ ECIDQWLESN KTCPVCRRNL DPNAPENIKE LIIEVIQENA HENRDQEQTS TSNEVMLSRQ
201: SSGNNERKIE TLPDKFSRSK TTGHSIVRNK PEEEDRYTLR LPDHVKIKVT RRHNNNQTES CISFGELVRN REGRFGEVSG QSLVPESGS

Arabidopsis Description

ATL30RING-H2 finger protein ATL30 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.