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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • extracellular 3
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:extracellular, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:extracellular
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:extracellular
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G72200.1 CDX70995 AT5G22290.1 21798944
AT1G72200.1 CDX88803 AT5G22290.1 21798944
AT1G72200.1 CDX92368 AT5G22290.1 21798944
AT1G72200.1 CDY09128 AT5G22290.1 21798944
AT1G72200.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY03652 Canola plasma membrane 79.91 47.22
CDX82176 Canola extracellular 70.09 44.93
CDY70284 Canola plasma membrane 73.08 43.96
CDY03651 Canola plasma membrane 72.65 42.18
CDX82179 Canola plasma membrane 58.97 39.32
Bra003887.1-P Field mustard endoplasmic reticulum, plasma membrane 58.12 37.88
AT1G72200.1 Thale cress plasma membrane 64.1 37.13
CDY21367 Canola golgi, plasma membrane 50.43 31.38
CDY62007 Canola golgi, plasma membrane 49.57 30.85
HORVU4Hr1G022090.1 Barley endoplasmic reticulum, golgi, plasma membrane 27.78 30.66
CDX75097 Canola extracellular 17.95 30.43
CDY04519 Canola endoplasmic reticulum, extracellular, plasma membrane 18.38 30.28
CDY48058 Canola extracellular 17.09 28.99
CDY31686 Canola nucleus 12.39 27.62
CDY05713 Canola extracellular 17.09 27.21
CDX86162 Canola endoplasmic reticulum, plasma membrane, vacuole 34.19 26.32
CDX80653 Canola plasma membrane 33.76 26.07
CDX86163 Canola plasma membrane 33.33 26.0
KRH52998 Soybean endoplasmic reticulum, extracellular, plasma membrane 36.75 25.75
KRH62285 Soybean endoplasmic reticulum, plasma membrane, vacuole 37.18 25.59
KRH72413 Soybean cytosol, golgi, vacuole 39.32 24.6
CDY19719 Canola endoplasmic reticulum, plasma membrane, vacuole 36.32 24.29
CDX90377 Canola extracellular, golgi 31.62 24.03
CDY53236 Canola plasma membrane 35.47 23.92
CDX99986 Canola plasma membrane 35.47 23.78
KRH16796 Soybean cytosol, endoplasmic reticulum, plasma membrane, plastid 38.46 23.75
GSMUA_Achr6P30500_001 Banana plasma membrane 29.49 23.63
CDY39477 Canola extracellular 31.2 23.55
VIT_18s0001g06670.t01 Wine grape extracellular, plasma membrane, vacuole 39.32 23.12
CDY25038 Canola plasma membrane 35.47 22.43
GSMUA_Achr7P12810_001 Banana endoplasmic reticulum, plasma membrane, vacuole 29.06 22.3
GSMUA_AchrUn_... Banana plastid 34.19 22.22
GSMUA_Achr5P17910_001 Banana golgi, plasma membrane, vacuole 32.48 22.03
CDY05577 Canola plasma membrane 35.9 21.99
Os09t0468300-00 Rice golgi, plasma membrane 36.32 21.96
TraesCS5D01G254900.1 Wheat golgi, plasma membrane 36.32 21.68
CDY31657 Canola extracellular, plasma membrane, plastid 33.76 21.47
CDY18787 Canola plasma membrane 35.47 21.45
Zm00001d005936_P001 Maize plasma membrane 35.9 21.37
CDY05049 Canola plasma membrane 26.5 21.23
CDX84269 Canola endoplasmic reticulum, plasma membrane, plastid 33.33 21.2
HORVU5Hr1G069980.1 Barley plasma membrane 34.62 21.09
TraesCS5B01G245800.1 Wheat plasma membrane 35.47 20.96
GSMUA_Achr3P20400_001 Banana mitochondrion 30.77 20.93
TraesCS5A01G248100.1 Wheat plasma membrane 35.47 20.91
Solyc04g074820.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 35.04 20.87
KRH72412 Soybean nucleus, plasma membrane, plastid 34.19 20.73
PGSC0003DMT400005472 Potato endoplasmic reticulum, plasma membrane, vacuole 34.62 20.72
EER99041 Sorghum endoplasmic reticulum, plasma membrane 35.9 20.39
GSMUA_AchrUn_... Banana golgi, plasma membrane 30.34 20.11
KRH16794 Soybean plasma membrane 33.33 19.9
Zm00001d020789_P001 Maize plasma membrane 33.76 19.85
GSMUA_Achr10P... Banana plasma membrane 32.91 19.85
EER92732 Sorghum golgi 31.2 19.84
CDY12527 Canola extracellular, plasma membrane, vacuole 20.09 19.75
TraesCS3D01G495500.1 Wheat vacuole 32.48 19.69
Zm00001d031261_P001 Maize golgi 31.62 19.63
CDY03202 Canola plasma membrane 23.5 19.57
TraesCS4B01G304400.1 Wheat plasma membrane 29.49 19.44
GSMUA_Achr3P06680_001 Banana mitochondrion, plastid 32.05 19.33
CDY25739 Canola endoplasmic reticulum, extracellular, plasma membrane 19.66 19.33
HORVU4Hr1G078260.1 Barley plasma membrane 29.49 19.33
CDY35174 Canola plasma membrane 23.08 19.22
CDX84270 Canola cytosol, plastid, vacuole 25.64 19.17
CDX77681 Canola golgi, mitochondrion, plasma membrane, plastid 23.5 19.16
CDY63052 Canola golgi, mitochondrion, plasma membrane, plastid 23.5 19.16
EES18560 Sorghum golgi, plasma membrane 32.05 19.08
Zm00001d027983_P001 Maize plasma membrane, plastid 29.49 19.06
CDX78812 Canola plasma membrane 23.93 19.05
CDY44502 Canola plasma membrane 23.93 19.05
TraesCS4A01G404600.1 Wheat plasma membrane 28.63 18.87
TraesCS4D01G302600.1 Wheat plasma membrane 28.63 18.87
CDY31656 Canola cytosol, endoplasmic reticulum, plastid 25.21 18.85
GSMUA_Achr9P15010_001 Banana endoplasmic reticulum, plasma membrane 28.63 18.72
Os03t0188200-01 Rice golgi 28.21 18.7
Zm00001d048230_P001 Maize golgi 30.34 18.68
CDY62419 Canola cytosol 11.97 18.67
Os08t0484200-01 Rice golgi 32.91 18.64
CDX90713 Canola extracellular, golgi, plasma membrane 26.92 18.58
HORVU6Hr1G022590.1 Barley golgi, mitochondrion 32.05 18.56
TraesCS6A01G122800.1 Wheat endoplasmic reticulum, golgi, mitochondrion 32.05 18.47
TraesCS6D01G113000.1 Wheat golgi 31.62 18.45
TraesCS6B01G151000.1 Wheat extracellular, golgi, plasma membrane 31.62 18.32
TraesCS6D01G294800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 31.62 18.27
HORVU6Hr1G077610.1 Barley plasma membrane 31.62 18.23
Zm00001d037192_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 32.48 18.05
CDY01502 Canola plasma membrane 22.65 17.85
TraesCS7A01G176700.1 Wheat golgi 31.62 17.83
TraesCS6B01G346000.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 30.34 17.66
TraesCS7D01G178000.1 Wheat golgi 30.77 17.65
TraesCS6A01G315600.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 30.34 17.53
Os06t0218300-01 Rice endoplasmic reticulum, extracellular, golgi 32.91 17.42
TraesCS7B01G081700.1 Wheat golgi 30.77 17.39
TraesCS4A01G104900.1 Wheat mitochondrion 28.63 17.31
Zm00001d029395_P001 Maize plasma membrane, plastid 28.21 17.23
PGSC0003DMT400045807 Potato plasma membrane 27.35 16.93
Solyc12g087860.1.1 Tomato vacuole 26.92 16.89
TraesCS3B01G549900.1 Wheat vacuole 22.65 16.83
HORVU4Hr1G057610.1 Barley plastid 29.49 16.75
CDY03116 Canola plasma membrane 25.21 16.71
Zm00001d052189_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 29.49 16.63
OQU85775 Sorghum golgi, plasma membrane, vacuole 29.91 16.55
Os02t0759400-01 Rice endoplasmic reticulum, golgi, mitochondrion, plastid 30.77 16.48
Zm00001d018122_P001 Maize vacuole 29.49 16.47
CDY12022 Canola plasma membrane 24.79 16.43
CDY13888 Canola plasma membrane 25.64 16.22
HORVU7Hr1G036380.2 Barley endoplasmic reticulum 28.63 16.11
HORVU4Hr1G080840.1 Barley cytosol 16.24 16.03
TraesCS4D01G200100.1 Wheat plastid 28.21 15.94
CDY50446 Canola mitochondrion 16.24 15.9
KXG39223 Sorghum golgi, plasma membrane, plastid, vacuole 26.07 15.76
CDY35921 Canola endoplasmic reticulum, extracellular, plasma membrane 24.79 15.63
Os03t0391100-00 Rice endoplasmic reticulum, golgi 29.06 15.63
CDX81954 Canola endoplasmic reticulum, plasma membrane, vacuole 25.21 15.4
TraesCS4B01G199100.1 Wheat plastid 29.06 15.21
OQU76061 Sorghum cytosol, peroxisome, plasma membrane 32.91 14.13
CDX97460 Canola endoplasmic reticulum, extracellular, plasma membrane 24.36 13.97
CDY66475 Canola endoplasmic reticulum, plasma membrane 24.36 13.94
CDX98867 Canola endoplasmic reticulum, golgi 20.94 13.88
CDX70126 Canola plasma membrane 23.5 13.65
CDY06859 Canola endoplasmic reticulum, plasma membrane 23.5 13.19
CDY35230 Canola endoplasmic reticulum, plasma membrane 23.08 12.95
CDX92900 Canola endoplasmic reticulum, plasma membrane 22.65 12.77
CDY50930 Canola endoplasmic reticulum, plasma membrane 22.65 12.62
CDY70750 Canola extracellular, mitochondrion, nucleus 12.82 9.9
CDY27787 Canola extracellular, plasma membrane, vacuole 12.39 9.63
CDY05145 Canola plasma membrane 11.97 9.43
CDX90435 Canola nucleus 22.65 8.63
CDY05714 Canola cytosol 1.71 1.88
CDY31685 Canola cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:CDX82175EnsemblPlantsGene:GSBRNA2T00137250001Gene3D:3.30.40.10GO:A0A078CZB6InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR14155PANTHER:PTHR14155:SF414PFAM:PF13639PFscan:PS50089
ProteinID:CDX82175ProteinID:CDX82175.1SEG:segSignalP:SignalP-TMSMART:SM00184SUPFAM:SSF57850
TMHMM:TMhelixUniParc:UPI0004EEBA89MapMan:19.2.2.1.5.3.3:::
Description
BnaC02g21150D
Coordinates
chrLK031827:+:1670945..1671879
Molecular Weight (calculated)
26212.7 Da
IEP (calculated)
6.074
GRAVY (calculated)
0.077
Length
234 amino acids
Sequence
(BLAST)
001: MNPRGLTGSI TGHHGSILQL HLFLLLLSGH ASAQSTDGDS DMSGESYRFD PNMVILMIVL ISVFFTLGFF SICLRTWLER FIGMNNAHSV GAGGNRLSLN
101: RPRAPGIDAS VIETFPTFRY STVKMLMISK EALECPICLN EFEDDETLLL IPKCCHVFHP DCIYAWLQSH ATCPLCRANL VPVPGESFFS IDIPARGPKL
201: FKMPRDLSSD DEFSARVQNR ILETDANYFY ERTI
Best Arabidopsis Sequence Match ( AT1G22500.1 )
(BLAST)
001: MVVMSRVSFY SSFLLLLLEV VVASSEFDDE GRTSFSPTTA IIMIVLVSVF FALGCISVYM RRCLQHALGM DSGGGPGNWL NVRQTTEPGL DASVIETFPT
101: FPYSTVKTLR IGKEALECPV CLNEFEDDET LRLIPQCCHV FHPGCIDAWL RSQTTCPLCR ANLVPVPGES VSSEIPGLAR ETGQNSLRTP IDDNRKRVLT
201: SPDERLIDSV AWTGNQSMPR KSMSTGWKLA ELYSPASSPG QPEENLDRYT LRLPQEIHDQ LVNSSLGKQG SKGQLALPQE RSSVRGFRTG SLGTEKNYFY
301: FERFDQDGRL DRRPFSITPP YHTRSIQSPD EIINASGNYQ DRAGAPKGLL LAIRSPFDRL FTGKKNAGER SYLQSGDASP V
Arabidopsis Description
ATL15E3 ubiquitin-protein ligase ATL15 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK92]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.