Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72200.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52998 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 36.18 | 43.11 |
| KRH62285 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 36.18 | 42.35 |
| KRH72413 | Soybean | cytosol, golgi, vacuole | 37.69 | 40.11 |
| KRH16796 | Soybean | cytosol, endoplasmic reticulum, plasma membrane, plastid | 37.69 | 39.58 |
| CDX82175 | Canola | extracellular | 23.12 | 39.32 |
| Bra003887.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 33.92 | 37.6 |
| CDY70284 | Canola | plasma membrane | 36.68 | 37.53 |
| GSMUA_Achr7P12810_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 28.64 | 37.38 |
| GSMUA_Achr3P20400_001 | Banana | mitochondrion | 31.91 | 36.92 |
| VIT_14s0128g00120.t01 | Wine grape | plasma membrane, plastid, vacuole | 38.94 | 36.9 |
| Bra008016.1-P | Field mustard | plasma membrane | 36.93 | 36.48 |
| CDY03651 | Canola | plasma membrane | 36.93 | 36.48 |
| Os09t0468300-00 | Rice | golgi, plasma membrane | 35.43 | 36.43 |
| AT1G72200.1 | Thale cress | plasma membrane | 36.68 | 36.14 |
| Bra012330.1-P | Field mustard | golgi, plasma membrane | 31.16 | 36.05 |
| GSMUA_Achr5P17910_001 | Banana | golgi, plasma membrane, vacuole | 31.16 | 35.94 |
| CDY21367 | Canola | golgi, plasma membrane | 33.92 | 35.9 |
| Bra040855.1-P | Field mustard | golgi, plasma membrane | 33.92 | 35.9 |
| CDY62007 | Canola | golgi, plasma membrane | 33.67 | 35.64 |
| GSMUA_Achr6P30500_001 | Banana | plasma membrane | 26.13 | 35.62 |
| TraesCS5D01G254900.1 | Wheat | golgi, plasma membrane | 34.92 | 35.46 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 31.41 | 35.41 |
| CDX82179 | Canola | plasma membrane | 31.16 | 35.33 |
| HORVU5Hr1G069980.1 | Barley | plasma membrane | 33.92 | 35.16 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 34.67 | 34.85 |
| CDX82176 | Canola | extracellular | 31.91 | 34.79 |
| Zm00001d020789_P001 | Maize | plasma membrane | 34.67 | 34.67 |
| GSMUA_Achr9P15010_001 | Banana | endoplasmic reticulum, plasma membrane | 31.16 | 34.64 |
| Zm00001d005936_P001 | Maize | plasma membrane | 34.17 | 34.61 |
| GSMUA_Achr10P... | Banana | plasma membrane | 33.67 | 34.54 |
| GSMUA_Achr3P06680_001 | Banana | mitochondrion, plastid | 33.67 | 34.54 |
| TraesCS5A01G248100.1 | Wheat | plasma membrane | 34.42 | 34.51 |
| AT1G22500.1 | Thale cress | plasma membrane | 32.91 | 34.38 |
| EER99041 | Sorghum | endoplasmic reticulum, plasma membrane | 34.92 | 33.74 |
| PGSC0003DMT400005472 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 32.91 | 33.5 |
| Bra008015.1-P | Field mustard | plasma membrane | 32.91 | 33.08 |
| CDY03652 | Canola | plasma membrane | 32.91 | 33.08 |
| Solyc04g074820.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 32.41 | 32.82 |
| KRH72412 | Soybean | nucleus, plasma membrane, plastid | 31.41 | 32.38 |
| TraesCS3D01G495500.1 | Wheat | vacuole | 31.41 | 32.38 |
| KRH16794 | Soybean | plasma membrane | 31.66 | 32.14 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 25.13 | 31.75 |
| TraesCS6D01G113000.1 | Wheat | golgi | 31.91 | 31.67 |
| HORVU4Hr1G022090.1 | Barley | endoplasmic reticulum, golgi, plasma membrane | 16.83 | 31.6 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 31.91 | 31.44 |
| GSMUA_AchrUn_... | Banana | plastid | 28.14 | 31.11 |
| EES18560 | Sorghum | golgi, plasma membrane | 30.65 | 31.04 |
| TraesCS6A01G122800.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion | 31.66 | 31.03 |
| Os08t0484200-01 | Rice | golgi | 31.66 | 30.51 |
| CDY25739 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 18.09 | 30.25 |
| CDY12527 | Canola | extracellular, plasma membrane, vacuole | 18.09 | 30.25 |
| Zm00001d031261_P001 | Maize | golgi | 28.64 | 30.24 |
| Solyc12g087860.1.1 | Tomato | vacuole | 28.14 | 30.03 |
| HORVU6Hr1G022590.1 | Barley | golgi, mitochondrion | 30.4 | 29.95 |
| PGSC0003DMT400045807 | Potato | plasma membrane | 28.39 | 29.89 |
| HORVU4Hr1G080840.1 | Barley | cytosol | 17.59 | 29.54 |
| Zm00001d018122_P001 | Maize | vacuole | 29.65 | 28.16 |
| OQU85775 | Sorghum | golgi, plasma membrane, vacuole | 29.9 | 28.13 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 29.15 | 27.95 |
| Os06t0218300-01 | Rice | endoplasmic reticulum, extracellular, golgi | 30.9 | 27.83 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 29.15 | 27.55 |
| TraesCS7D01G178000.1 | Wheat | golgi | 27.64 | 26.96 |
| TraesCS7B01G081700.1 | Wheat | golgi | 27.89 | 26.81 |
| TraesCS7A01G176700.1 | Wheat | golgi | 27.64 | 26.51 |
| TraesCS6D01G294800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.63 | 26.17 |
| TraesCS6A01G315600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.38 | 25.93 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.13 | 25.87 |
| HORVU4Hr1G078260.1 | Barley | plasma membrane | 23.12 | 25.77 |
| HORVU6Hr1G077610.1 | Barley | plasma membrane | 25.88 | 25.37 |
| EER92732 | Sorghum | golgi | 23.37 | 25.27 |
| Os03t0188200-01 | Rice | golgi | 22.36 | 25.21 |
| TraesCS4A01G104900.1 | Wheat | mitochondrion | 24.37 | 25.06 |
| Zm00001d048230_P001 | Maize | golgi | 23.87 | 25.0 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 22.61 | 24.86 |
| TraesCS4D01G302600.1 | Wheat | plasma membrane | 22.11 | 24.79 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 21.86 | 24.51 |
| TraesCS4D01G200100.1 | Wheat | plastid | 25.38 | 24.4 |
| HORVU4Hr1G057610.1 | Barley | plastid | 25.13 | 24.27 |
| Os02t0759400-01 | Rice | endoplasmic reticulum, golgi, mitochondrion, plastid | 26.63 | 24.26 |
| TraesCS4A01G404600.1 | Wheat | plasma membrane | 21.61 | 24.23 |
| KXG39223 | Sorghum | golgi, plasma membrane, plastid, vacuole | 22.61 | 23.26 |
| Os03t0391100-00 | Rice | endoplasmic reticulum, golgi | 24.62 | 22.53 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 21.61 | 22.45 |
| TraesCS4B01G199100.1 | Wheat | plastid | 25.13 | 22.37 |
| HORVU7Hr1G036380.2 | Barley | endoplasmic reticulum | 23.37 | 22.36 |
| OQU76061 | Sorghum | cytosol, peroxisome, plasma membrane | 29.65 | 21.65 |
| VIT_11s0052g00530.t01 | Wine grape | plasma membrane | 18.59 | 16.19 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 18.84 | 15.99 |
Protein Annotations
| EntrezGene:100259131 | wikigene:100259131 | MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | ProteinID:CCB45608 | ProteinID:CCB45608.1 |
| UniProt:F6H0Y6 | EMBL:FN595227 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR013083 | EntrezGene:LOC100259131 | wikigene:LOC100259131 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF414 | SMART:SM00184 | SUPFAM:SSF57850 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00021086C7 |
| ArrayExpress:VIT_18s0001g06670 | EnsemblPlantsGene:VIT_18s0001g06670 | EnsemblPlants:VIT_18s0001g06670.t01 | RefSeq:XP_002284024 | RefSeq:XP_002284024.1 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr18:+:5020431..5021751
Molecular Weight (calculated)
44254.1 Da
IEP (calculated)
8.907
GRAVY (calculated)
-0.290
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPIFNFNGV ACLLNISLLL PLLSCATAQT AAEQSPPPSE LMSLAQKFNP SMAIVMIAIV SAFFFMGFFS VYLRQCIERR VRGRFNTEIV GIGGHRSWMA
101: ARGLNSSDIE RFPTFVYSAV KAHKIGKEGL ECAVCLNEFE DDETLRLLPK CNHVFHSDCI DLWLASHVTC PVCRANLTPK PGEKFCAPVP IFGPETESDE
201: SDTRVEIVET PNQVPIAVDA QSPDVMNHGR DTPNRPPRSR SIRARITGMF PRSHSTGHSL IQPGENRERF TLRLPEEIRN QIMNTSLSRT KSWVALPGVQ
301: SSKRGYRANS VGSLRGKTYF NYEQFNGEVR AERLGFSMTP PFVPRTGSSH ARSPQGCEGS LTPKTLFRSL KSPFDRLFLP GGSVGERLSD RPRSDSPV
101: ARGLNSSDIE RFPTFVYSAV KAHKIGKEGL ECAVCLNEFE DDETLRLLPK CNHVFHSDCI DLWLASHVTC PVCRANLTPK PGEKFCAPVP IFGPETESDE
201: SDTRVEIVET PNQVPIAVDA QSPDVMNHGR DTPNRPPRSR SIRARITGMF PRSHSTGHSL IQPGENRERF TLRLPEEIRN QIMNTSLSRT KSWVALPGVQ
301: SSKRGYRANS VGSLRGKTYF NYEQFNGEVR AERLGFSMTP PFVPRTGSSH ARSPQGCEGS LTPKTLFRSL KSPFDRLFLP GGSVGERLSD RPRSDSPV
001: MNPKGRTNLN RSIIGGHDHG SILQLLLFLL LLSSHGGFKF VAGQATHGGS DVSGDSSRFD PTMAILMIVL VSVFFFLGFF SVYIRRCLER VMGMDYGNPN
101: DAGNWLATNR QQARGLDASI IETFPTFQYS TVKTLRIGKE ALECSVCLNE FEDDETLRLI PKCCHVFHPG CIDAWLRSHT TCPLCRADLI PVPGESIVSI
201: QIPGLVNDPP GSDPNGDRIR SLGSPDARLI ESVALTCNQS MPRRSMSTGW NLAGMFTNSD RTGQHSENLD RFTLRLPQDI HNKLVNPNLS KVHVALPQVM
301: SSTRGYRTGS LGSERNYFYY ERFDQDGRLD RRPFSITPPY RTSSINHMSP GGSGGDKVRA SSPKSLLLAM RSPFDRLFLG KNNNVGENSS DHLRSCDATP
401: SNTV
101: DAGNWLATNR QQARGLDASI IETFPTFQYS TVKTLRIGKE ALECSVCLNE FEDDETLRLI PKCCHVFHPG CIDAWLRSHT TCPLCRADLI PVPGESIVSI
201: QIPGLVNDPP GSDPNGDRIR SLGSPDARLI ESVALTCNQS MPRRSMSTGW NLAGMFTNSD RTGQHSENLD RFTLRLPQDI HNKLVNPNLS KVHVALPQVM
301: SSTRGYRTGS LGSERNYFYY ERFDQDGRLD RRPFSITPPY RTSSINHMSP GGSGGDKVRA SSPKSLLLAM RSPFDRLFLG KNNNVGENSS DHLRSCDATP
401: SNTV
Arabidopsis Description
ATL11RING-H2 finger protein ATL11 [Source:UniProtKB/Swiss-Prot;Acc:Q84W40]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.