Factsheet for VIT_11s0016g03420.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
nucleus 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070587	Potato	plastid	44.99	61.34
KRH76331	Soybean	endoplasmic reticulum	54.8	60.33
Solyc05g018310.1.1	Tomato	extracellular, plasma membrane, vacuole	40.72	58.95
KRH39345	Soybean	endoplasmic reticulum, vacuole	51.39	57.52
PGSC0003DMT400000810	Potato	plasma membrane	41.79	52.97
Solyc12g007320.1.1	Tomato	plasma membrane	42.0	51.71
CDY05713	Canola	extracellular	15.78	50.34
Bra011068.1-P	Field mustard	endoplasmic reticulum, plasma membrane	43.28	48.68
AT4G28890.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	44.56	48.38
CDY06859	Canola	endoplasmic reticulum, plasma membrane	42.86	48.2
CDX97460	Canola	endoplasmic reticulum, extracellular, plasma membrane	41.58	47.79
CDY35230	Canola	endoplasmic reticulum, plasma membrane	42.43	47.72
AT2G20030.1	Thale cress	endoplasmic reticulum, plasma membrane	39.66	47.69
CDY50930	Canola	endoplasmic reticulum, plasma membrane	42.43	47.38
Bra024178.1-P	Field mustard	endoplasmic reticulum, plasma membrane	42.43	47.38
CDX92900	Canola	endoplasmic reticulum, plasma membrane	41.79	47.23
CDY66475	Canola	endoplasmic reticulum, plasma membrane	40.94	46.94
CDY13888	Canola	plasma membrane	36.46	46.22
Bra010349.1-P	Field mustard	endoplasmic reticulum, plasma membrane	41.36	46.19
CDY35921	Canola	endoplasmic reticulum, extracellular, plasma membrane	36.03	45.55
GSMUA_Achr9P06250_001	Banana	endoplasmic reticulum, plasma membrane	34.75	44.41
GSMUA_Achr9P00230_001	Banana	vacuole	34.33	43.75
GSMUA_Achr6P26720_001	Banana	plasma membrane	32.2	43.02
CDX81954	Canola	endoplasmic reticulum, plasma membrane, vacuole	34.97	42.82
GSMUA_Achr4P08120_001	Banana	plasma membrane	30.28	39.55
GSMUA_Achr6P22700_001	Banana	plasma membrane	20.04	39.5
CDY05714	Canola	cytosol	17.7	38.97
TraesCS1A01G444900.1	Wheat	golgi, plasma membrane	29.21	34.86
HORVU1Hr1G095220.1	Barley	golgi, plasma membrane	29.0	34.52
Os05t0596500-01	Rice	endoplasmic reticulum, plasma membrane	27.72	33.77
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	27.29	32.74
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	30.06	32.64
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	29.64	32.03
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	26.87	30.96
EES18815	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	29.42	29.18
VIT_11s0052g00530.t01	Wine grape	plasma membrane	27.72	28.45
VIT_18s0001g06670.t01	Wine grape	extracellular, plasma membrane, vacuole	15.99	18.84
VIT_14s0128g00120.t01	Wine grape	plasma membrane, plastid, vacuole	15.78	17.62

Protein Annotations

EntrezGene:100244010	wikigene:100244010	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	ProteinID:CCB51500	ProteinID:CCB51500.1
UniProt:F6HH04	EMBL:FN595756	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100244010	wikigene:LOC100244010	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155
PANTHER:PTHR14155:SF95	SMART:SM00184	SUPFAM:SSF57850	TIGR:TC71075	TMHMM:TMhelix	UniParc:UPI000210849B
ArrayExpress:VIT_11s0016g03420	EnsemblPlantsGene:VIT_11s0016g03420	EnsemblPlants:VIT_11s0016g03420.t01	unigene:Vvi.2815	RefSeq:XP_002280643	RefSeq:XP_002280643.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:2778391..2787457

Molecular Weight (calculated)

53374.5 Da

IEP (calculated)

7.576

GRAVY (calculated)

-0.360

Length

469 amino acids

Sequence
(BLAST)

001: MPLPIHPFLG FISDFNQNTS LILHVLVECL SGKRGILGKS RASVLAMNRW SSIIWFLLSG LLFNVESQAA PGQENFSSQD AVTAFKPSLA VVIGILAVMF
101: LLTFILLVYA KLCHRASNSD RENQQGLTRS ESRFSGIDKT VIESLPFFRF CSLKGSKEGL ECAVCLSKFE DIEILRLLPK CKHAFHIDCV DQWLEKHSSC
201: PLCRHKVSAE DLAILTYSNS LRFLWNQSEL RENSNLELFV QREEDHHGSS RFSIGSSFRK VEKGVKEEES VLIQEEEDDN DDEKILHKIN HKIIVSDVVL
301: KNRWSSVSSS DLMYLNSELV HAMSSDRFAS LDSNNSAMGR PIEDWEVMKI KEEIERKRIF ESRVSRINHS NPVSSSGLPS TSKTEANSGH ASRFLHPTEK
401: RSMSEITACS RYADFSTKNR IRESSLAQNN IKEERMRRLW LPIARRTVEW FANREGSQQS QNTKQAPDV

Best Arabidopsis Sequence Match ( AT4G28890.1 )
(BLAST)

001: MYQIFFFFLP LLHSYASAQT PPPFRNGDLV ANFEPSLAVV TGVLAIMFAL TFVLLVYAKC CHIDLRSGSG DRRRHDRRLR QGIFFNRSTA SSDRFSGLDK
101: TAIESLPLFR FSALKGSKQG LDCSVCLSKF ESVEILRLLP KCRHAFHIGC IDQWLEQHAT CPLCRDRVSM EEDSSVLTNG NSFRFLNQSE IREDSSLELY
201: IEREEEEERI HREELSGSSR FSIGESFRKI LKLGNKEKTL LDEHVNDKDE KKLMHKFNHR IVVSDVVFKN RWSNVSSSDL MFLNSEMVNS ISSERFSSLD
301: HVKRGDEEDQ IGILRIKEEM EAKRMLENKL TSMTTMFSSE NGDSGSKSRS VMIEPGRRSV SDITAVPRLS ISIHGDCSGS AAETASALQN GGNETEERRR
401: RLWLPIARKT AQWFANREKR SQINTTHQHF DV

Arabidopsis Description

ATL42E3 ubiquitin-protein ligase ATL42 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF85]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.