Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009777_P001 | Maize | extracellular, golgi, plasma membrane | 76.47 | 73.46 |
| EES18815 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 84.91 | 70.19 |
| Os05t0596500-01 | Rice | endoplasmic reticulum, plasma membrane | 54.48 | 55.32 |
| TraesCS1A01G444900.1 | Wheat | golgi, plasma membrane | 52.94 | 52.67 |
| HORVU1Hr1G095220.1 | Barley | golgi, plasma membrane | 52.94 | 52.54 |
| TraesCS1D01G453000.1 | Wheat | extracellular, plasma membrane | 55.24 | 49.77 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 54.99 | 49.77 |
| GSMUA_Achr6P26720_001 | Banana | plasma membrane | 36.83 | 41.03 |
| GSMUA_Achr9P06250_001 | Banana | endoplasmic reticulum, plasma membrane | 35.04 | 37.33 |
| GSMUA_Achr9P00230_001 | Banana | vacuole | 34.53 | 36.68 |
| GSMUA_Achr4P08120_001 | Banana | plasma membrane | 33.5 | 36.49 |
| PGSC0003DMT400070587 | Potato | plastid | 31.97 | 36.34 |
| Solyc05g018310.1.1 | Tomato | extracellular, plasma membrane, vacuole | 29.16 | 35.19 |
| CDY05713 | Canola | extracellular | 13.04 | 34.69 |
| GSMUA_Achr6P22700_001 | Banana | plasma membrane | 19.95 | 32.77 |
| PGSC0003DMT400000810 | Potato | plasma membrane | 30.18 | 31.89 |
| CDY13888 | Canola | plasma membrane | 29.92 | 31.62 |
| AT2G20030.1 | Thale cress | endoplasmic reticulum, plasma membrane | 31.2 | 31.28 |
| CDY50930 | Canola | endoplasmic reticulum, plasma membrane | 33.25 | 30.95 |
| Bra024178.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 33.25 | 30.95 |
| CDX92900 | Canola | endoplasmic reticulum, plasma membrane | 32.74 | 30.84 |
| CDY35921 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 28.9 | 30.46 |
| CDX81954 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 29.67 | 30.29 |
| Bra011068.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 32.23 | 30.22 |
| CDY06859 | Canola | endoplasmic reticulum, plasma membrane | 31.97 | 29.98 |
| CDY35230 | Canola | endoplasmic reticulum, plasma membrane | 31.97 | 29.98 |
| CDX97460 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 31.2 | 29.9 |
| Solyc12g007320.1.1 | Tomato | plasma membrane | 28.9 | 29.66 |
| CDY66475 | Canola | endoplasmic reticulum, plasma membrane | 30.95 | 29.58 |
| Bra010349.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 31.46 | 29.29 |
| AT4G28890.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 32.23 | 29.17 |
| KRH76331 | Soybean | endoplasmic reticulum | 31.46 | 28.87 |
| Zm00001d014612_P001 | Maize | peroxisome | 28.64 | 28.21 |
| KRH39345 | Soybean | endoplasmic reticulum, vacuole | 29.92 | 27.92 |
| KRH16295 | Soybean | plasma membrane | 27.62 | 27.34 |
| VIT_11s0016g03420.t01 | Wine grape | plastid | 32.74 | 27.29 |
| KRH62061 | Soybean | plastid | 18.16 | 26.2 |
| KRH52730 | Soybean | golgi, plasma membrane, vacuole | 26.34 | 25.12 |
| CDY05714 | Canola | cytosol | 13.55 | 24.88 |
| Zm00001d026494_P001 | Maize | plastid | 12.28 | 23.65 |
| Zm00001d030038_P001 | Maize | plastid | 11.76 | 19.83 |
| Zm00001d005936_P001 | Maize | plasma membrane | 19.69 | 19.59 |
| Zm00001d031261_P001 | Maize | golgi | 18.67 | 19.36 |
| Zm00001d020789_P001 | Maize | plasma membrane | 19.69 | 19.35 |
| Zm00001d027983_P001 | Maize | plasma membrane, plastid | 16.62 | 17.96 |
| Zm00001d016901_P001 | Maize | vacuole | 15.6 | 17.58 |
| Zm00001d029395_P001 | Maize | plasma membrane, plastid | 17.14 | 17.49 |
| Zm00001d048230_P001 | Maize | golgi | 16.88 | 17.37 |
| Zm00001d003499_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 17.14 | 17.27 |
| Zm00001d037192_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 17.39 | 16.15 |
| Zm00001d052189_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 16.88 | 15.9 |
| Zm00001d018122_P001 | Maize | vacuole | 15.86 | 14.8 |
Protein Annotations
| EntrezGene:103630821 | MapMan:19.2.2.1.5.3.3 | Gene3D:3.30.40.10 | UniProt:A0A1D6MEM3 | ProteinID:AQK89082.1 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF220 | SMART:SM00184 | SUPFAM:SSF57850 | SignalP:SignalP-TM | TMHMM:TMhelix |
| UniParc:UPI0002216DC0 | EnsemblPlantsGene:Zm00001d039216 | EnsemblPlants:Zm00001d039216_P001 | EnsemblPlants:Zm00001d039216_T001 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
Putative RING zinc finger domain superfamily protein
Coordinates
chr6:-:172922907..172924082
Molecular Weight (calculated)
42318.5 Da
IEP (calculated)
7.291
GRAVY (calculated)
-0.083
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MALRLPSHQL APLAVLVCAA VAAYDEELSA SPPSDNNNTP AGLGIKVPFR PRVAIVVGIF TMIFSLTFLL LMYAKFCHPS SSSSPPQPAS NNGAAAAAVC
101: VGLPKQVIES LPFFRFATLR GARHGMECSV CLARFDDADL LRLLPRCRHA FHLACVDRWL QSSATCPLCR SNVDADDAKL DADHALSSGR FDDGAAAEAA
201: GSGRDLLDIF VERVPGPDRH KHRIIVSDVV FKSRWSELNS ADLIALDTEM LRSMSSGRFV FPPDSPYCAA PEHKLAAEDQ EETTMANKNK ERKRLLEPVV
301: VVDAPLGGEC SSGSAVSASA ARMISSGVRS MSEIVSLPRL RAAARERLSE EENRRWLPIA RRTARWFAGR ASGGQEEHRA VHVVAAEHDG V
101: VGLPKQVIES LPFFRFATLR GARHGMECSV CLARFDDADL LRLLPRCRHA FHLACVDRWL QSSATCPLCR SNVDADDAKL DADHALSSGR FDDGAAAEAA
201: GSGRDLLDIF VERVPGPDRH KHRIIVSDVV FKSRWSELNS ADLIALDTEM LRSMSSGRFV FPPDSPYCAA PEHKLAAEDQ EETTMANKNK ERKRLLEPVV
301: VVDAPLGGEC SSGSAVSASA ARMISSGVRS MSEIVSLPRL RAAARERLSE EENRRWLPIA RRTARWFAGR ASGGQEEHRA VHVVAAEHDG V
001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV
Arabidopsis Description
ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.