Factsheet for Zm00001d026494_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82489	Sorghum	plasma membrane, vacuole	80.3	68.78
TraesCS2A01G501100.1	Wheat	plastid	55.66	57.36
TraesCS2D01G501500.1	Wheat	plastid	55.66	57.36
TraesCS2B01G529100.1	Wheat	plastid	54.68	56.35
CDY31686	Canola	nucleus	12.81	24.76
Zm00001d030038_P001	Maize	plastid	23.65	20.69
Zm00001d029395_P001	Maize	plasma membrane, plastid	30.05	15.93
Zm00001d005936_P001	Maize	plasma membrane	29.56	15.27
Zm00001d020789_P001	Maize	plasma membrane	29.06	14.82
Zm00001d016901_P001	Maize	vacuole	24.63	14.41
Zm00001d027983_P001	Maize	plasma membrane, plastid	25.12	14.09
Zm00001d014612_P001	Maize	peroxisome	27.09	13.85
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	25.12	13.14
Zm00001d031261_P001	Maize	golgi	24.14	13.0
Zm00001d048230_P001	Maize	golgi	23.65	12.63
Zm00001d037192_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	26.11	12.59
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	23.65	12.28
Zm00001d052189_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	24.63	12.05
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	23.15	11.55
Zm00001d018122_P001	Maize	vacuole	23.65	11.46
CDY31685	Canola	cytosol	0.0	0.0

Protein Annotations

EntrezGene:107403155	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	UniProt:A0A1D6JGE4	ProteinID:AQK46790.1	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR14155	PANTHER:PTHR14155:SF78	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00077FCF65
EnsemblPlantsGene:Zm00001d026494	EnsemblPlants:Zm00001d026494_P001	EnsemblPlants:Zm00001d026494_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Putative RING zinc finger domain superfamily protein

Coordinates

chr10:-:147113322..147113933

Molecular Weight (calculated)

21382.7 Da

IEP (calculated)

7.421

GRAVY (calculated)

-0.023

Length

203 amino acids

Sequence
(BLAST)

001: MTSPPTPLPA LARQAMQSPS PPTKVGPPPL PPPPLPAVDA AVIMGVLTAV LLALFLFLIY AKHCKQRGPG ERPGGLGLGF APSSCDRCRS GLSSSAVGAL
101: PAVRFGDGDV DVGRATECAV CLGAFDAAEL LRVLPACRHA FHAECIDTWL LAHSTCPVCR RRVTGGHVDD SEPEDSAATR QHGRRSADDA EVQVVVHRAW
201: DQR

Best Arabidopsis Sequence Match ( AT2G20030.1 )
(BLAST)

001: MNSPQEISIL FFFIIFLDYV SAQSPPPPNL YATSDLFKPS LAIITGVFSI VFTLTFVLLV YAKCFHNDLR SETDSDGERI RHDRLWQGLF NRSSRFSGLD
101: KKAIESLPFF RFSALKGLKQ GLECSVCLSK FEDVEILRLL PKCRHAFHIG CIDQWLEQHA TCPLCRNRVN IEDDLSVLGN SSTSLRILNQ SETREEDSRL
201: EIYIEREEGT NDGSSRFSSF RKILKKSLLL EREGNENIDE KKLMHKFNHR IVVSDAVFKN RWSNITSSDL TFLTSEMLNS VSSDRFSSVD RVHRGNLRDK
301: EDMEMKRMLI KHKDSSRRTV SEITTVSREK AVGGSYRGST ASTSQNYAVT ATTEERRRRL WLPIARRTAQ WFVNREKSND LNTTRQNLNV

Arabidopsis Description

ATL12Putative RING-H2 finger protein ATL12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL78]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.