Factsheet for Zm00001d016901_P001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 2
vacuole 5
extracellular 3
endoplasmic reticulum 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G446700.1	Wheat	golgi	61.96	63.61
TraesCS5B01G442500.1	Wheat	golgi	60.52	61.95
HORVU5Hr1G106000.1	Barley	golgi	61.1	61.81
TraesCS3B01G499500.1	Wheat	vacuole	59.94	59.94
TraesCS3A01G459700.1	Wheat	vacuole	59.08	59.94
TraesCS3D01G452500.1	Wheat	golgi, plasma membrane, vacuole	59.65	59.83
HORVU3Hr1G098880.1	Barley	plasma membrane	57.93	58.6
Os02t0572300-00	Rice	nucleus, plastid	62.25	51.67
GSMUA_Achr8P09280_001	Banana	cytosol	5.48	39.58
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	31.7	28.35
Zm00001d005936_P001	Maize	plasma membrane	31.12	27.48
Zm00001d020789_P001	Maize	plasma membrane	29.68	25.88
Zm00001d030038_P001	Maize	plastid	16.71	25.0
Zm00001d026494_P001	Maize	plastid	14.41	24.63
KRH38505	Soybean	plasma membrane, vacuole	19.88	24.21
Zm00001d031261_P001	Maize	golgi	26.22	24.14
Zm00001d037192_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	27.95	23.04
Zm00001d052189_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	27.09	22.65
Zm00001d027983_P001	Maize	plasma membrane, plastid	23.34	22.38
Zm00001d018122_P001	Maize	vacuole	26.8	22.2
Zm00001d029395_P001	Maize	plasma membrane, plastid	23.05	20.89
KRH13267	Soybean	plasma membrane	9.8	20.86
Zm00001d048230_P001	Maize	golgi	22.77	20.79
Zm00001d014612_P001	Maize	peroxisome	18.44	16.12
Zm00001d009777_P001	Maize	extracellular, golgi, plasma membrane	18.44	15.72
Zm00001d039216_P001	Maize	endoplasmic reticulum, extracellular, golgi	17.58	15.6

Protein Annotations

EntrezGene:100283118	MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	ProteinID:AQK71904.1	EMBL:BT068349	UniProt:C0PJ80
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016874
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF434
SMART:SM00184	SUPFAM:SSF57850	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000195CD40	EnsemblPlantsGene:Zm00001d016901
EnsemblPlants:Zm00001d016901_P001	EnsemblPlants:Zm00001d016901_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

E3 ubiquitin-protein ligase ATL6

Coordinates

chr5:-:179641467..179642510

Molecular Weight (calculated)

36918.8 Da

IEP (calculated)

6.234

GRAVY (calculated)

-0.103

Length

347 amino acids

Sequence
(BLAST)

001: MYAAAVLAAV SAVSVVAAQS PEPRDNQTVA DVMSISIFMA VFFPVFVVLL AFACLHLFRA PDDDDPQAPD AASAPEWPRG GGSRKGGLDA AAIAALPLVF
101: FREVRQHRIV DGREDALECS VCLLEFDDDD ALRLLPTCPH AFHPECIGLW LERHATCPLC RASVLDDAPP APAAQLELHT APPLTPDSSP VHAAIVLIGG
201: AGASEVGEEE DRTTIQRLAR NRRAAGRQAL PRSNSTGHSA SDGGMERFAL RLPEHVRLEL LMSHRLRHVT SAVASVRVME GSAHDTSTVG GSVRSTMARL
301: MSLFTPGAGW KGDGDDKSGK AEATAASSLR RRENSSRGAV GEEKRSV

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.