Factsheet for TraesCS5B01G442500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G446700.1	Wheat	golgi	93.51	93.79
HORVU5Hr1G106000.1	Barley	golgi	87.32	86.3
TraesCS3B01G499500.1	Wheat	vacuole	78.76	76.95
Zm00001d016901_P001	Maize	vacuole	61.95	60.52
Os02t0572300-00	Rice	nucleus, plastid	64.6	52.39
GSMUA_Achr8P09280_001	Banana	cytosol	5.6	39.58
TraesCS5B01G245800.1	Wheat	plasma membrane	34.81	29.8
TraesCS2B01G336300.1	Wheat	extracellular, golgi, plasma membrane	32.74	29.21
TraesCS3B01G549900.1	Wheat	vacuole	26.55	28.57
TraesCS7B01G475300.1	Wheat	endoplasmic reticulum, plasma membrane	15.63	27.6
TraesCS6B01G151000.1	Wheat	extracellular, golgi, plasma membrane	32.45	27.23
KRH38505	Soybean	plasma membrane, vacuole	21.53	25.61
TraesCS6B01G346000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	30.09	25.37
TraesCS3B01G060000.1	Wheat	mitochondrion	17.11	24.89
TraesCS2B01G529100.1	Wheat	plastid	14.45	24.87
KRH13267	Soybean	plasma membrane	11.8	24.54
TraesCS7B01G081700.1	Wheat	golgi	29.79	24.4
TraesCS4B01G304400.1	Wheat	plasma membrane	24.19	23.1
TraesCS4B01G199100.1	Wheat	plastid	27.43	20.81
TraesCS1B01G479700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	18.58	14.58
TraesCS7B01G327800.1	Wheat	plastid	17.11	14.43

Protein Annotations

EnsemblPlants:TraesCS5B01G442500.1	EnsemblPlantsGene:TraesCS5B01G442500	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF434	PFAM:PF13639	PFscan:PS50089	PFscan:PS51257
SEG:seg	SignalP:SignalP-TM	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	TMHMM:TMhelix
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:615711684..615712703

Molecular Weight (calculated)

36995.5 Da

IEP (calculated)

5.548

GRAVY (calculated)

-0.322

Length

339 amino acids

Sequence
(BLAST)

001: MAASRKRAFA SVVFTAIASC AAAQTPGGPG SDSSMSFSDV MVISFFMAIF FPVFVVLLAF ACLRLYRPPD EPLAAEDSSS EWPHSHHKEG LDAAEIAALP
101: LVSYRDVKQH RISDGRVDPL ECAVCLLEFD DDDSLRLLPT CPHAFHPQCI GLWLEKHVTC PLCRANVLDP PPPPLVPDQE LETPAPPDSP SVHIHDTVVL
201: IEDDPSRSEE EDDSARILAR TRREGGREAL PRSNSTGHER AGGMERFALR LPEHVRLEIL MSHRLRHVTS AVASVRVREG SAHDPAAGGN SVRSAVARLF
301: SLFAPGDGWS GDVEDKSGGS SRWRRDDSTR GAGEDKRND

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.