Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G315800.1 | Wheat | golgi | 95.53 | 97.32 |
| TraesCS2A01G318200.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 95.53 | 95.53 |
| TraesCS7B01G475300.1 | Wheat | endoplasmic reticulum, plasma membrane | 25.26 | 50.0 |
| TraesCS3B01G060000.1 | Wheat | mitochondrion | 27.37 | 44.64 |
| GSMUA_Achr8P09280_001 | Banana | cytosol | 5.53 | 43.75 |
| TraesCS3B01G549900.1 | Wheat | vacuole | 30.0 | 36.19 |
| TraesCS5B01G245800.1 | Wheat | plasma membrane | 37.37 | 35.86 |
| TraesCS5B01G442500.1 | Wheat | golgi | 29.21 | 32.74 |
| TraesCS6B01G151000.1 | Wheat | extracellular, golgi, plasma membrane | 32.63 | 30.69 |
| TraesCS3B01G499500.1 | Wheat | vacuole | 27.37 | 29.97 |
| TraesCS6B01G346000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 30.53 | 28.86 |
| TraesCS7B01G081700.1 | Wheat | golgi | 31.32 | 28.74 |
| KRH38505 | Soybean | plasma membrane, vacuole | 21.32 | 28.42 |
| TraesCS4B01G304400.1 | Wheat | plasma membrane | 25.0 | 26.76 |
| KRH13267 | Soybean | plasma membrane | 11.05 | 25.77 |
| TraesCS2B01G529100.1 | Wheat | plastid | 12.37 | 23.86 |
| TraesCS4B01G199100.1 | Wheat | plastid | 25.0 | 21.25 |
| TraesCS1B01G479700.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 18.42 | 16.2 |
| TraesCS7B01G327800.1 | Wheat | plastid | 17.11 | 16.17 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G336300.1 | EnsemblPlantsGene:TraesCS2B01G336300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF414 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SignalP:SignalP-TM | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16454 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.3 |
Description
No Description!
Coordinates
chr2B:+:480412093..480413235
Molecular Weight (calculated)
40428.1 Da
IEP (calculated)
8.679
GRAVY (calculated)
-0.333
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAVMEVRPH LLVLLCLLGA GAGAGMAQSL PPAPVPQSGA AAAAPRPTPF GRTMSTVITV AISVFFFLLF FCAYINQCRL AENAAPQGAN AAAAGAGASR
101: RGKRGLDPAL VATFPIMQYR EIKEHKIGRG VLECAVCLTA FEEADDLRLL PHCSHAFHPE CIDPWLEARI TCPLCRANLE KPPPPPQPSA VAPPSPEQAA
201: LHQPSPSPSP PHAVAIPVRE DEEDSDEDDR KEEAMELEML RSERRAARLP RSHSTGHSLF AASAAAAERS DHERFTLRLP HHVREQVLRS RRLRHATSLI
301: DLAGASPEGS VRGGRPAGGG GGGSSHGGRR WQAFLARTMS WARGGGDGSV RKGWDGSTRR GRDDAESSRK GAASPAAARP
101: RGKRGLDPAL VATFPIMQYR EIKEHKIGRG VLECAVCLTA FEEADDLRLL PHCSHAFHPE CIDPWLEARI TCPLCRANLE KPPPPPQPSA VAPPSPEQAA
201: LHQPSPSPSP PHAVAIPVRE DEEDSDEDDR KEEAMELEML RSERRAARLP RSHSTGHSLF AASAAAAERS DHERFTLRLP HHVREQVLRS RRLRHATSLI
301: DLAGASPEGS VRGGRPAGGG GGGSSHGGRR WQAFLARTMS WARGGGDGSV RKGWDGSTRR GRDDAESSRK GAASPAAARP
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
Arabidopsis Description
ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.