Factsheet for TraesCS2D01G315800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G336300.1	Wheat	extracellular, golgi, plasma membrane	97.32	95.53
TraesCS2A01G318200.1	Wheat	endoplasmic reticulum, golgi, vacuole	97.05	95.26
TraesCS3D01G050600.1	Wheat	plasma membrane	56.84	60.74
TraesCS7D01G537300.1	Wheat	golgi, nucleus, plasma membrane	27.61	48.36
GSMUA_Achr8P09280_001	Banana	cytosol	5.63	43.75
TraesCS7D01G538000.1	Wheat	golgi	29.76	43.36
TraesCS5D01G254900.1	Wheat	golgi, plasma membrane	39.14	37.24
TraesCS3D01G495500.1	Wheat	vacuole	36.73	35.49
TraesCS5D01G446700.1	Wheat	golgi	30.03	33.14
TraesCS6D01G113000.1	Wheat	golgi	33.78	31.42
TraesCS3D01G452500.1	Wheat	golgi, plasma membrane, vacuole	28.42	30.64
TraesCS7D01G178000.1	Wheat	golgi	32.17	29.41
TraesCS6D01G294800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	31.9	29.38
KRH38505	Soybean	plasma membrane, vacuole	21.72	28.42
TraesCS4D01G302600.1	Wheat	plasma membrane	26.81	28.17
KRH13267	Soybean	plasma membrane	11.53	26.38
TraesCS2D01G501500.1	Wheat	plastid	13.4	25.38
TraesCS4D01G200100.1	Wheat	plastid	26.27	23.67
TraesCS7D01G420000.1	Wheat	plastid	17.96	16.71
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	18.77	16.13

Protein Annotations

EnsemblPlants:TraesCS2D01G315800.1	EnsemblPlantsGene:TraesCS2D01G315800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR14155	PANTHER:PTHR14155:SF414	PFAM:PF13639	PFscan:PS50089
SEG:seg	SignalP:SignalP-TM	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	TMHMM:TMhelix
MapMan:19.2.2.1.5.3.3	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:405275603..405276724

Molecular Weight (calculated)

40177.9 Da

IEP (calculated)

8.852

GRAVY (calculated)

-0.340

Length

373 amino acids

Sequence
(BLAST)

001: MVAVMEVRPH LLLVLLCLLG AGAGAGMAQS LPPAPVPQSG VAAAPRPTPF GRTMSTVITV AISVFFFLLF FCAYINQCRL AENAAPQGAN AAAAGAGASR
101: RGKRGLDPAV VATFPIMQYR EIKEHKIGRG VLECAVCLTA FEEADDLRLL PHCSHAFHPE CIDPWLEARI TCPLCRANLE KPPPPAVAPP SPEQVARHQP
201: SPSPSPPHAV AIPVREEEEE ESDEDDRKEE AMELEMLRSE RRAARLPRSH STGHSLFAAS AAAAERSDHE RFTLRLPHHV REQVLRSRRL RHATSLIDFA
301: GASPEGSVRG GRPAGGSRHG GRRWQAFLAR TMSWARGGGD GSVRKGWDGS TRRGRDDAES SRKGAASPAA ARP

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.