Factsheet for TraesCS5D01G254900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G248100.1	Wheat	plasma membrane	97.7	96.47
TraesCS5B01G245800.1	Wheat	plasma membrane	96.17	95.2
HORVU5Hr1G069980.1	Barley	plasma membrane	90.82	92.71
Os09t0468300-00	Rice	golgi, plasma membrane	74.23	75.19
TraesCS3D01G495500.1	Wheat	vacuole	71.68	72.8
Zm00001d005936_P001	Maize	plasma membrane	70.15	69.97
Zm00001d020789_P001	Maize	plasma membrane	70.66	69.6
EER99041	Sorghum	endoplasmic reticulum, plasma membrane	71.43	67.96
TraesCS6D01G113000.1	Wheat	golgi	58.16	56.86
KRG92822	Soybean	endoplasmic reticulum, plasma membrane, vacuole	39.54	46.13
KRH33975	Soybean	golgi, plasma membrane, vacuole	41.33	45.13
CDY53236	Canola	plasma membrane	35.71	40.35
Bra010641.1-P	Field mustard	extracellular, golgi	31.63	40.26
CDX90377	Canola	extracellular, golgi	31.63	40.26
KRG96857	Soybean	vacuole	38.27	40.0
CDY39477	Canola	extracellular	31.12	39.35
KRH68588	Soybean	plasma membrane	36.73	39.34
TraesCS2D01G315800.1	Wheat	golgi	37.24	39.14
VIT_14s0128g00120.t01	Wine grape	plasma membrane, plastid, vacuole	41.58	38.81
AT4G09100.1	Thale cress	extracellular	13.01	38.64
Bra040642.1-P	Field mustard	plasma membrane	37.24	37.82
CDY18787	Canola	plasma membrane	37.24	37.73
Bra036631.1-P	Field mustard	plasma membrane	33.42	37.43
CDY19719	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.42	37.43
AT5G27420.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	34.95	37.23
KRH52998	Soybean	endoplasmic reticulum, extracellular, plasma membrane	31.63	37.13
CDX99986	Canola	plasma membrane	32.91	36.96
AT4G40070.1	Thale cress	extracellular, golgi, mitochondrion, plastid	30.36	36.84
KRH62285	Soybean	endoplasmic reticulum, plasma membrane, vacuole	31.89	36.76
AT3G05200.1	Thale cress	plasma membrane	37.24	36.68
KRH72413	Soybean	cytosol, golgi, vacuole	34.95	36.63
CDX82175	Canola	extracellular	21.68	36.32
Bra009960.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	27.81	35.86
CDX86162	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.81	35.86
TraesCS7D01G178000.1	Wheat	golgi	36.99	35.54
Solyc03g112340.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	35.97	35.43
KRH16796	Soybean	cytosol, endoplasmic reticulum, plasma membrane, plastid	34.18	35.36
PGSC0003DMT400046825	Potato	endoplasmic reticulum, plasma membrane, vacuole	35.71	35.18
Bra039454.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	34.44	34.97
TraesCS3D01G050600.1	Wheat	plasma membrane	31.12	34.96
VIT_18s0001g06670.t01	Wine grape	extracellular, plasma membrane, vacuole	35.46	34.92
TraesCS5D01G446700.1	Wheat	golgi	30.1	34.91
CDY25038	Canola	plasma membrane	32.91	34.86
CDY05577	Canola	plasma membrane	33.93	34.82
TraesCS6D01G294800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	35.97	34.81
CDX80653	Canola	plasma membrane	26.79	34.65
Bra009962.1-P	Field mustard	mitochondrion, plastid	25.26	34.62
PGSC0003DMT400073575	Potato	extracellular, plasma membrane	38.01	34.41
Bra020591.1-P	Field mustard	plasma membrane	33.42	34.38
CDX86163	Canola	plasma membrane	26.02	34.0
CDX75097	Canola	extracellular	11.73	33.33
TraesCS3D01G452500.1	Wheat	golgi, plasma membrane, vacuole	29.08	32.95
AT2G35000.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	31.38	32.54
CDY31657	Canola	extracellular, plasma membrane, plastid	30.36	32.34
TraesCS4D01G302600.1	Wheat	plasma membrane	29.08	32.11
Bra005374.1-P	Field mustard	plasma membrane, plastid, vacuole	30.1	32.07
CDX84269	Canola	endoplasmic reticulum, plasma membrane, plastid	30.1	32.07
Bra038386.1-P	Field mustard	extracellular	11.22	31.88
CDY48058	Canola	extracellular	11.22	31.88
AT4G09120.1	Thale cress	plasma membrane	27.55	31.3
AT2G34990.2	Thale cress	plasma membrane	25.77	31.17
CDY62007	Canola	golgi, plasma membrane	29.85	31.12
TraesCS7D01G537300.1	Wheat	golgi, nucleus, plasma membrane	16.84	30.99
TraesCS2D01G501500.1	Wheat	plastid	15.56	30.96
CDY70284	Canola	plasma membrane	30.61	30.85
KRH72412	Soybean	nucleus, plasma membrane, plastid	30.36	30.83
AT1G72200.1	Thale cress	plasma membrane	31.63	30.69
Bra003887.1-P	Field mustard	endoplasmic reticulum, plasma membrane	28.06	30.64
Bra040855.1-P	Field mustard	golgi, plasma membrane	29.34	30.59
CDY21367	Canola	golgi, plasma membrane	29.34	30.59
PGSC0003DMT400005472	Potato	endoplasmic reticulum, plasma membrane, vacuole	30.36	30.43
CDX84270	Canola	cytosol, plastid, vacuole	24.23	30.35
AT1G35330.1	Thale cress	endoplasmic reticulum	25.26	30.18
KRH16794	Soybean	plasma membrane	30.1	30.1
TraesCS7D01G538000.1	Wheat	golgi	19.64	30.08
Bra005375.1-P	Field mustard	cytosol, nucleus, plastid	23.98	30.03
CDY31656	Canola	cytosol, endoplasmic reticulum, plastid	23.98	30.03
Bra012330.1-P	Field mustard	golgi, plasma membrane	26.28	29.94
Bra001139.1-P	Field mustard	extracellular, golgi, plasma membrane	26.53	29.89
Bra008016.1-P	Field mustard	plasma membrane	30.61	29.78
CDY03651	Canola	plasma membrane	30.61	29.78
CDX82179	Canola	plasma membrane	26.53	29.63
CDX82176	Canola	extracellular	27.55	29.59
Bra000673.1-P	Field mustard	endoplasmic reticulum, golgi, plasma membrane	25.51	29.5
CDY05049	Canola	plasma membrane	21.68	29.11
Solyc04g074820.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	29.08	29.01
CDX90713	Canola	extracellular, golgi, plasma membrane	25.0	28.91
AT1G22500.1	Thale cress	plasma membrane	28.06	28.87
TraesCS4D01G200100.1	Wheat	plastid	30.36	28.74
AT4G09110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	21.43	27.81
CDY12022	Canola	plasma membrane	25.0	27.76
Solyc12g087860.1.1	Tomato	vacuole	26.28	27.61
Bra008015.1-P	Field mustard	plasma membrane	27.81	27.53
CDY03652	Canola	plasma membrane	27.81	27.53
PGSC0003DMT400045807	Potato	plasma membrane	26.53	27.51
Bra028075.1-P	Field mustard	plasma membrane	24.49	27.2
AT4G09130.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	24.74	27.17
CDY05145	Canola	plasma membrane	20.41	26.94
CDY03116	Canola	plasma membrane	24.23	26.91
CDY27787	Canola	extracellular, plasma membrane, vacuole	20.66	26.91
CDY70750	Canola	extracellular, mitochondrion, nucleus	20.66	26.73
CDY12527	Canola	extracellular, plasma membrane, vacuole	13.01	21.43
CDY25739	Canola	endoplasmic reticulum, extracellular, plasma membrane	13.01	21.43
TraesCS7D01G420000.1	Wheat	plastid	18.62	18.2
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	19.39	17.51
CDY50446	Canola	mitochondrion	9.95	16.32

Protein Annotations

EnsemblPlants:TraesCS5D01G254900.1	EnsemblPlantsGene:TraesCS5D01G254900	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF322	PFAM:PF13639	PFscan:PS50089	SEG:seg
SignalP:SignalP-TM	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	TMHMM:TMhelix	MapMan:19.2.2.1.5.3.3

Description

No Description!

Coordinates

chr5D:-:361403775..361404953

Molecular Weight (calculated)

41684.3 Da

IEP (calculated)

8.707

GRAVY (calculated)

-0.266

Length

392 amino acids

Sequence
(BLAST)

001: MGPARCASGR LWLLLLALAV ADFTAAQQNQ NPPPPGGQYY TNFSPSMAIV IVVLIAAFFF LGFFSVYIRH CYGDSPYSAT TLPLGAAAAR SRRQQRGLDP
101: AVLETFPTMA YADVKEHKAV KGALECAVCL SEFDDDETLR LLPKCSHVFH PDCIDTWLAS HVTCPVCRAN LVPDGDADAP AAGDQPAELS SVHPAPQPQE
201: LPAPEAEAAH AVVIDVEESE DERIIREETD ELTRIGSLKR ALRSKSSRGP ARFPRSHSTG HSLATRASTG AGAERFTLRL PEGVLREVVA AGKLRRTKSL
301: VAFTAGRQGS MRRALRLGAG GGDGSSRGGR SVRLGQSGRW PSFLSRTFSA AWGSRSTRRA ESDGSSKGGK PAGAGGKSVE CNDQACAAGQ RV

Best Arabidopsis Sequence Match ( AT3G05200.1 )
(BLAST)

001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV

Arabidopsis Description

ATL6E3 ubiquitin-protein ligase ATL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXX9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.