Factsheet for TraesCS7D01G538000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 3
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G551400.1	Wheat	golgi, plastid	81.64	85.66
HORVU7Hr1G121570.1	Barley	endoplasmic reticulum	76.56	77.47
TraesCS7D01G537300.1	Wheat	golgi, nucleus, plasma membrane	55.08	66.2
GSMUA_Achr8P09280_001	Banana	cytosol	7.42	39.58
Os04t0450300-00	Rice	endoplasmic reticulum, golgi	42.97	32.45
TraesCS2D01G315800.1	Wheat	golgi	43.36	29.76
Zm00001d003499_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	43.36	28.61
KXG26428	Sorghum	plasma membrane	44.14	27.83
TraesCS3D01G050600.1	Wheat	plasma membrane	37.11	27.22
TraesCS2D01G501500.1	Wheat	plastid	16.41	21.32
TraesCS5D01G254900.1	Wheat	golgi, plasma membrane	30.08	19.64
TraesCS3D01G495500.1	Wheat	vacuole	27.73	18.39
TraesCS6D01G113000.1	Wheat	golgi	27.73	17.71
KRH13267	Soybean	plasma membrane	10.94	17.18
TraesCS5D01G446700.1	Wheat	golgi	21.88	16.57
TraesCS3D01G452500.1	Wheat	golgi, plasma membrane, vacuole	21.88	16.18
TraesCS6D01G294800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	25.39	16.05
TraesCS7D01G178000.1	Wheat	golgi	24.22	15.2
TraesCS4D01G302600.1	Wheat	plasma membrane	20.7	14.93
KRH38505	Soybean	plasma membrane, vacuole	16.02	14.39
TraesCS4D01G200100.1	Wheat	plastid	22.66	14.01
TraesCS7D01G420000.1	Wheat	plastid	19.92	12.72
TraesCS1D01G453000.1	Wheat	extracellular, plasma membrane	15.62	9.22

Protein Annotations

EnsemblPlants:TraesCS7D01G538000.1	EnsemblPlantsGene:TraesCS7D01G538000	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR14155	PANTHER:PTHR14155:SF454	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	TMHMM:TMhelix	MapMan:19.2.2.1.5.3.3	:

Description

No Description!

Coordinates

chr7D:+:629247861..629248631

Molecular Weight (calculated)

28106.8 Da

IEP (calculated)

6.850

GRAVY (calculated)

-0.331

Length

256 amino acids

Sequence
(BLAST)

001: MVMGKHLVAV GRDLIFRGPH TLTPRATPST GSNTTKSTII SVVICVLFFL VGLCGYINKY CRRVDDGRAT AAAPVGGRSS SGRSSRKRGL EQSVVATFPV
101: MPWRGHHKKD KEKEKTVMDE EEERCPVCLA VFEEGDNLRL LPHCSHVFHP ECIDPWLQAR ATCPLCRANL ERPLPADAVA IAMPAERSDD DNVDDGKEEE
201: EAMELEMLRT ERRAARLPSV ATGKLTLPAP VERIAERVSA EDINKPPSSV DVIGPS

Best Arabidopsis Sequence Match ( AT1G22500.1 )
(BLAST)

001: MVVMSRVSFY SSFLLLLLEV VVASSEFDDE GRTSFSPTTA IIMIVLVSVF FALGCISVYM RRCLQHALGM DSGGGPGNWL NVRQTTEPGL DASVIETFPT
101: FPYSTVKTLR IGKEALECPV CLNEFEDDET LRLIPQCCHV FHPGCIDAWL RSQTTCPLCR ANLVPVPGES VSSEIPGLAR ETGQNSLRTP IDDNRKRVLT
201: SPDERLIDSV AWTGNQSMPR KSMSTGWKLA ELYSPASSPG QPEENLDRYT LRLPQEIHDQ LVNSSLGKQG SKGQLALPQE RSSVRGFRTG SLGTEKNYFY
301: FERFDQDGRL DRRPFSITPP YHTRSIQSPD EIINASGNYQ DRAGAPKGLL LAIRSPFDRL FTGKKNAGER SYLQSGDASP V

Arabidopsis Description

ATL15E3 ubiquitin-protein ligase ATL15 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK92]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.